PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g090440.1 | ||||||||
Common Name | MTR_2g090440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24155.8 Da PI: 6.7975 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 9.8e-10 | 17 | 67 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 +++E++RR++++ f++L ++lP+ + p++ l + + +A++YIksL+ Medtr2g090440.1 17 ERKIVEKNRRNQMKILFSNLNSILPSyN---PKELaLPLPDQVDEAINYIKSLE 67 5689**********************66...55555****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-10 | 11 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.52E-4 | 11 | 71 | No hit | No description |
PROSITE profile | PS50888 | 11.033 | 13 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-9 | 15 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-6 | 17 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDHNQQGGQP SSSTKVERKI VEKNRRNQMK ILFSNLNSIL PSYNPKELAL PLPDQVDEAI 60 NYIKSLETNL KGAKEKKESL MGNKKRSRGG YGAKGSIIKL PKIEIHEMGS TLQVIVTCGV 120 DEHFIFCEIM RILHEENVEV ISSNSSLTGD SLLHTVHAQI PQTLLQFGAM KISQRLKAFV 180 NGSMSDVETG PLLWDLEIGS ESWELLDSIV TMSLPNP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g090440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465109.1 | 1e-159 | transcription factor bHLH162 | ||||
TrEMBL | A0A072VAT4 | 1e-158 | A0A072VAT4_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | GLYMA06G44660.2 | 1e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g090440.1 |
Entrez Gene | 25487669 |
Publications ? help Back to Top | |||
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