PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g089070.1
Common NameMTR_2g089070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 286aa    MW: 32790.1 Da    PI: 8.7513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g089070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00011521921055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+++ ++   L++l+P++     k+++ a+  e+A +Y+k Lq
  Medtr2g089070.1 152 RQRRQKLSEKTRCLQKLMPWD-----KRMDQATLYEEAYKYVKFLQ 192
                      9*******************9.....89****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.604142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-9146200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-5148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-4150196No hitNo description
Gene3DG3DSA:4.10.280.105.5E-7151199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDPNSHSIFS GDTTVDPIFS NFTLQSLLTL NPSYFSDNYH HILTDDSPPL PNFPESIDQT  60
QDLFNNVNKK HFLVPKPEHP FNLPSLEEYL PFQPRQQQPF NFFPKHLPPF EPLHRLPQLR  120
SPEPSNRKRL HPETTPSPPP PSSLIPQSNL ARQRRQKLSE KTRCLQKLMP WDKRMDQATL  180
YEEAYKYVKF LQAQLSVLQS MPSYGVGYGG GGTTASGGVF DDLEKLKRNQ ALQILVNSPV  240
AQTKLCERGY CVFSMEQFSL LKKLSEKRQQ QENFSEHGSS KTFFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g089070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691740.0AC169174.3 Medicago truncatula chromosome 2 BAC clone mth2-143k13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597049.10.0transcription factor bHLH117
TrEMBLG7IKN00.0G7IKN0_MEDTR; Putative transcription factor bHLH family
STRINGAES673000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.13e-24bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]