PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g089000.1 | ||||||||
Common Name | MTR_2g089000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29373.1 Da PI: 5.2576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.5e-10 | 111 | 156 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRd++N++f eL ++l ++ + +K +K++ L Av+ + +L Medtr2g089000.1 111 AGREKVRRDKLNDRFMELSSVLEPD---TLPKTDKVSLLNDAVRVVTQL 156 569**********************...9***************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-13 | 96 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.163 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-8 | 110 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-7 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 113 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.24E-7 | 113 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDMDSTGGSS IWLYDYGYDD ISISAADFMA SDSSAAASTF TWMPQPQSQT QIINPPSSHM 60 SLEMDYSLDS TVMESNPSKR MEMEYSLDST VLENGPSKRL RTESYASSSK AGREKVRRDK 120 LNDRFMELSS VLEPDTLPKT DKVSLLNDAV RVVTQLRNEA ERLKERNDEL REKVKELKAE 180 KKELRDEKNK LKLDKEKLEQ QVKLASVQSN FLSNAMAAKG QTANHKLMPF IGYPGISMWQ 240 FMSPATVDTS QDHLLRPPVA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.5764 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g089000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142086 | 0.0 | BT142086.1 Medicago truncatula clone JCVI-FLMt-5A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597042.1 | 0.0 | transcription factor bHLH115 | ||||
Swissprot | Q9FH37 | 1e-64 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | G7IKM3 | 0.0 | G7IKM3_MEDTR; BHLH domain class transcription factor | ||||
STRING | AES67293 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14916 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g089000.1 |
Entrez Gene | 11408870 |