PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g086880.1
Common NameMTR_2g086880
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 590aa    MW: 66653.3 Da    PI: 8.7121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g086880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.2e-49181441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+
  Medtr2g086880.1  18 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVK 110
                      579************************988.99***************667777899************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Medtr2g086880.1 111 S-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCV 144
                      *.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5510159IPR003441NAC domain
PROSITE profilePS5100553.44518160IPR003441NAC domain
PfamPF023651.8E-2520143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEIVVSKEAQ MSIAASSMFP GFRFCPTDEE LISYYLRKKL DGHEESVQVI SEVELCKYEP  60
WDLPAKSFIQ SDNEWFFFSP RGRKYPNGSQ SKRATDCGYW KATGKERNVK SGSNVIGTKR  120
TLVFHLGRAP KGERTEWIMH EYCVSDRSPD SLVVCRLKRN TEFRVNDASN RASSSQINPV  180
HSHESDCAGQ INPVNSHESN CAISEGGTDH RERGICEQEK EVDGSSKRGS SSYGSASMEQ  240
IDSMSESNQR PANDGFLTDS SGQLKMDEED CYAEILRNDI IKLDESSMSQ GAQTRPNNLA  300
HSHPCQGTAQ RRIRLRVPKS THSQPGARFS KTMHQSKSSF IARMTNRLMI FAFFVFTLTA  360
ILFWSSLGGH KQVRNIVGKF QNHYVGSIGP VFSTITYRKL HLPRKRVTLQ VSITLITVVA  420
FTFQPTSTTA SRHSPFPYLT SSQTYFLTPQ PHTLRKEGET LNSSQIDNES SFSSITLFRG  480
IMSRPMLLVF LLIILIITSQ FEWKQPLVSD VESNSSVTQK QHRISNAEET VKEKIILVQE  540
KNIRRLNELV RHLQEQLQQC KGSNGTINST VGPLTERILE LERQQILED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-431715919167NAC domain-containing protein 19
3swm_B2e-431715919167NAC domain-containing protein 19
3swm_C2e-431715919167NAC domain-containing protein 19
3swm_D2e-431715919167NAC domain-containing protein 19
3swp_A2e-431715919167NAC domain-containing protein 19
3swp_B2e-431715919167NAC domain-containing protein 19
3swp_C2e-431715919167NAC domain-containing protein 19
3swp_D2e-431715919167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g086880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1463320.0AC146332.47 Medicago truncatula clone mth2-7l17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572681.10.0NAC domain-containing protein 40
TrEMBLG7IHH00.0G7IHH0_MEDTR; NAC transcription factor-like protein
STRINGAES671080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-90NTM1-like 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]