PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g086880.1 | ||||||||
Common Name | MTR_2g086880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 590aa MW: 66653.3 Da PI: 8.7121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.6 | 5.2e-49 | 18 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+ Medtr2g086880.1 18 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVK 110 579************************988.99***************667777899************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+k+tLvf+ grapkge+t+W+mhey + Medtr2g086880.1 111 S-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCV 144 *.99*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-55 | 10 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.445 | 18 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 20 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MEIVVSKEAQ MSIAASSMFP GFRFCPTDEE LISYYLRKKL DGHEESVQVI SEVELCKYEP 60 WDLPAKSFIQ SDNEWFFFSP RGRKYPNGSQ SKRATDCGYW KATGKERNVK SGSNVIGTKR 120 TLVFHLGRAP KGERTEWIMH EYCVSDRSPD SLVVCRLKRN TEFRVNDASN RASSSQINPV 180 HSHESDCAGQ INPVNSHESN CAISEGGTDH RERGICEQEK EVDGSSKRGS SSYGSASMEQ 240 IDSMSESNQR PANDGFLTDS SGQLKMDEED CYAEILRNDI IKLDESSMSQ GAQTRPNNLA 300 HSHPCQGTAQ RRIRLRVPKS THSQPGARFS KTMHQSKSSF IARMTNRLMI FAFFVFTLTA 360 ILFWSSLGGH KQVRNIVGKF QNHYVGSIGP VFSTITYRKL HLPRKRVTLQ VSITLITVVA 420 FTFQPTSTTA SRHSPFPYLT SSQTYFLTPQ PHTLRKEGET LNSSQIDNES SFSSITLFRG 480 IMSRPMLLVF LLIILIITSQ FEWKQPLVSD VESNSSVTQK QHRISNAEET VKEKIILVQE 540 KNIRRLNELV RHLQEQLQQC KGSNGTINST VGPLTERILE LERQQILED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 17 | 159 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g086880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146332 | 0.0 | AC146332.47 Medicago truncatula clone mth2-7l17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572681.1 | 0.0 | NAC domain-containing protein 40 | ||||
TrEMBL | G7IHH0 | 0.0 | G7IHH0_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES67108 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 4e-90 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g086880.1 |
Entrez Gene | 11413720 |
Publications ? help Back to Top | |||
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