PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g073370.1
Common NameMTR_2g073370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family DBB
Protein Properties Length: 295aa    MW: 32348.7 Da    PI: 5.0312
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g073370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.7e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Medtr2g073370.1  4 QCNVCEGAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box28.33.7e-095495338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     ++kC+ ++e    +fC +++ llC++C l++H        H+
  Medtr2g073370.1 54 MPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTAnayvsgHQ 95
                     799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
CDDcd000213.04E-9347No hitNo description
SMARTSM003363.7E-11447IPR000315B-box-type zinc finger
PfamPF006431.8E-5447IPR000315B-box-type zinc finger
SMARTSM003363.8E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145299IPR000315B-box-type zinc finger
PfamPF006436.6E-75495IPR000315B-box-type zinc finger
CDDcd000211.29E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKIQCNVCEG AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSAS SSHMPKCDIC  60
QEAFGYFFCL EDRALLCRKC DLAIHTANAY VSGHQRFLLT GVKVGLEATD HGTSSNSLKT  120
DSGEKVSDTK SSSVSRKVSQ MPQSSEYNEM LPTEAGGFGD FPPAKVSYGG GSNSGNMSQW  180
TIDEFFGVND FSQNYNYMDG SSNSRADSGK LEGSDSPILR SNEEEMEYDD YMDRVPDSSW  240
TVPQIPSPPT ASGLNWPKNP RYSFDNALFV PDIGFTSMQH PQNSSNFSRP RNHH*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g073370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464521.10.0B-box zinc finger protein 22
SwissprotQ9SYM23e-93BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A072VAB50.0A0A072VAB5_MEDTR; B-box type zinc finger protein
STRINGXP_004488990.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-89light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]