PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g068880.1 | ||||||||
Common Name | MTR_2g068880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35958.1 Da PI: 7.0702 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.3 | 1.6e-49 | 24 | 152 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv++yL++k+++k++ + + ik++diyk++PwdLp ++v + eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+++s+ Medtr2g068880.1 24 PGFRFHPTDEELVTFYLRRKLDKKPIAI-DLIKQIDIYKYDPWDLPkANVPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSN 116 9**************************9.99***************6688889999*************************************8 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vglkktLv+y+g+a kg+ktdW+mhe+rl Medtr2g068880.1 117 gaeGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRL 152 6655556***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.915 | 22 | 186 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-53 | 22 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-25 | 24 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MGMNEDFNMD NEYVVDGDDD VPLPGFRFHP TDEELVTFYL RRKLDKKPIA IDLIKQIDIY 60 KYDPWDLPKA NVPGAEKEGY FFCQRGRKYR NSVRPNRVTG SGFWKATGID KAIYSNGAEG 120 NDCVGLKKTL VYYRGSAGKG TKTDWMMHEF RLPSNIDAKT NISYPKNVAD YAHEAEIWTL 180 CRIFKRNVSK SKSMADVKPL ATKHRTIHEK SSRMNSNMEL NTNQQTYINF GQTIHEHHYN 240 DDKPINNHTS SDQRNQFHVD QLSSSVEYQP QQINVTQSSN FWIKQAANEL LSFDNWDELG 300 SVVNFVSDSP SM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 24 | 192 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 24 | 192 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 24 | 192 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 24 | 192 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 24 | 192 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 24 | 192 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 24 | 192 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g068880.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596151.2 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | G7IGZ8 | 0.0 | G7IGZ8_MEDTR; Putative transcription factor NAM family | ||||
STRING | AES66402 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-82 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g068880.1 |
Entrez Gene | 11408357 |