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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g067740.1 | ||||||||
Common Name | MTR_2g067740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24071.8 Da PI: 8.6754 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F+++ L H++ H Medtr2g067740.1 61 YPCKFCNKKFPSSQALGGHQNAH 83 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 53 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.69E-7 | 58 | 88 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-6 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSETLRFGDG VTRENKKLKR KMDDANIDAD SDVLLSLSVG GGGSGRSSFK PLKSHEEQRE 60 YPCKFCNKKF PSSQALGGHQ NAHRRERVLS RIEKEIQLRT FGLGVHHFFP YSNHHQYPFI 120 VAGSSPLYHG VGWPQFVSPA IYGNSIGMII NSAWPTQTPL NNNVGFENYQ HNDHLQVPSF 180 NVALNSHVVM VNNNHYEPND NQNSSSFPDS SFKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g067740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464277.1 | 1e-160 | zinc finger protein 3 | ||||
TrEMBL | A0A072V937 | 1e-158 | A0A072V937_MEDTR; C2H2-type zinc finger protein | ||||
STRING | XP_004514908.1 | 8e-43 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14229 | 12 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 2e-13 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g067740.1 |
Entrez Gene | 25486990 |
Publications ? help Back to Top | |||
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