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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g061030.1 | ||||||||
Common Name | MTR_2g061030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 340aa MW: 37816.2 Da PI: 7.7297 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.8e-18 | 199 | 253 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Medtr2g061030.1 199 RKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 253 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 5e-41 | 199 | 289 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Medtr2g061030.1 199 RKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 289 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.1E-6 | 61 | 145 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 8.55E-19 | 187 | 256 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 195 | 255 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-16 | 197 | 259 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-15 | 199 | 256 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 199 | 253 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 204 | 253 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 230 | 253 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.4E-24 | 255 | 298 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.1E-11 | 255 | 289 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MELGLSLGDS SKPLIGLMEK HPHQTSKELG LGFNTTLSIC PIINTTPRDQ LHQQQEEEKT 60 QRDININNNS NRTENPNHVL HQLDLLPQLS FPWNNPSQNG NLLSTEFGGC SRGLDVNVVP 120 PATVVVMADD EIALSSSPNS AASSFQMDLC MYSRGGSGGR SLSGSGGNKR EFSDGEGYDQ 180 RNSSRVSDED DNCGVRNTRK KLRLSKDQSA FLEESFKEHH TLNPKQKLAL AKQLNLRPRQ 240 VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLHK ELQELRALKT SNPFNMQLPA 300 TTLTMCPSCE RVATNSTATS SVTNTSATIN GNNNNKINQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 203 | TRKKLRL |
2 | 247 | 255 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.5196 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g061030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ118115 | 0.0 | DQ118115.2 Medicago sativa type II homeodomain-leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595805.1 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | A2YW03 | 2e-84 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 2e-84 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | G7IJ30 | 0.0 | G7IJ30_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | AES66056 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-61 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g061030.1 |
Entrez Gene | 11440706 |
Publications ? help Back to Top | |||
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