PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g056000.1

Common Name

MTR_2g056000

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 187aa MW: 20871.6 Da PI: 4.6875

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g056000.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77.7	1.6e-24	41	125	3	87
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re+r+ti+++ +l al+ lGf +y+e++ + Medtr2g056000.1 41 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAY 125 6899***************************************************************************986543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.0E-38	38	170	IPR009072	Histone-fold
SuperFamily	SSF47113	3.14E-34	42	173	IPR009072	Histone-fold
Pfam	PF00808	9.9E-21	44	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKEGCVARCE YDGAHNKLMT CRINHNNNTK MEPMDIVAKS KEDASLPKAT MTKIIKEMLP 60 PDVRVARDTQ DLLIECCVEF INLVSSESNE VCNREERRTI APEHVLKALG VLGFGEYIEE 120 VYAAYEQHKM ETVQDSIKGA KWSGAAEMTE EQALAEQQRM FAEARARMNG GTITSNQPDA 180 DQSLEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-32	42	165	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.13775	0.0	flower\| glandular trichome\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g056000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918274	0.0	JQ918274.1 Medicago truncatula nuclear trancription factor Y subunit B1 (NF-YB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632301.1	1e-112	protein Dr1 homolog
Swissprot	P49592	2e-87	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A072V8R2	1e-137	A0A072V8R2_MEDTR; Nuclear transcription factor Y protein
STRING	XP_004488351.1	1e-111	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4766	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	8e-90	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Medtr2g056000.1
Entrez Gene	25486801

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]