PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g056000.1 | ||||||||
Common Name | MTR_2g056000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YB | ||||||||
Protein Properties | Length: 187aa MW: 20871.6 Da PI: 4.6875 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 77.7 | 1.6e-24 | 41 | 125 | 3 | 87 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re+r+ti+++ +l al+ lGf +y+e++ + Medtr2g056000.1 41 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAY 125 6899***************************************************************************986543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.0E-38 | 38 | 170 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.14E-34 | 42 | 173 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-21 | 44 | 109 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKEGCVARCE YDGAHNKLMT CRINHNNNTK MEPMDIVAKS KEDASLPKAT MTKIIKEMLP 60 PDVRVARDTQ DLLIECCVEF INLVSSESNE VCNREERRTI APEHVLKALG VLGFGEYIEE 120 VYAAYEQHKM ETVQDSIKGA KWSGAAEMTE EQALAEQQRM FAEARARMNG GTITSNQPDA 180 DQSLEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-32 | 42 | 165 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13775 | 0.0 | flower| glandular trichome| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g056000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918274 | 0.0 | JQ918274.1 Medicago truncatula nuclear trancription factor Y subunit B1 (NF-YB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632301.1 | 1e-112 | protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-87 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A072V8R2 | 1e-137 | A0A072V8R2_MEDTR; Nuclear transcription factor Y protein | ||||
STRING | XP_004488351.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 8e-90 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g056000.1 |
Entrez Gene | 25486801 |
Publications ? help Back to Top | |||
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