PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g045020.1 | ||||||||
Common Name | MTR_2g045020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21673.6 Da PI: 8.3132 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.4 | 2.5e-10 | 36 | 65 | 15 | 44 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstg 44 Rr gi+ KA ELS+LC+ + a+i+ s++ Medtr2g045020.1 36 ERRLGIFNKAIELSILCQSKTAIIVKSPNK 65 59************************9863 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0017 | 21 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-10 | 24 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.021 | 36 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-7 | 37 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNKNCELSEE RKNAGTKLNN TRKRKMHEIK KLDEKERRLG IFNKAIELSI LCQSKTAIIV 60 KSPNKNKFYA CGYPCDSVIQ RFLTGRMMVE DGKKKKEDDD IAKTLRLQYE ALQEKLEEEE 120 DNLKSLKVTE SQKSDFNVHD WWNNSIDDMD LASLEDFKNS LDSFKNNLRA ASQAEKSNLH 180 PNLNIAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | TRKRKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g045020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595402.1 | 1e-135 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A396JBD2 | 1e-134 | A0A396JBD2_MEDTR; Putative transcription factor MADS-type1 family | ||||
STRING | AES65653 | 1e-135 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-10 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g045020.1 |
Entrez Gene | 11443695 |
Publications ? help Back to Top | |||
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