PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g033170.1
Common NameMTR_2g033170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 330aa    MW: 37139.1 Da    PI: 5.6419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g033170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W+t ar  g++Rt+k+c++rw++yl
  Medtr2g033170.1 26 RGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding50.45e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Medtr2g033170.1  79 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1022173IPR017930Myb domain
SuperFamilySSF466891.01E-3023120IPR009057Homeodomain-like
SMARTSM007171.9E-142575IPR001005SANT/Myb domain
PfamPF002495.4E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-222780IPR009057Homeodomain-like
CDDcd001673.63E-112873No hitNo description
PROSITE profilePS5129422.91774128IPR017930Myb domain
SMARTSM007172.9E-1478126IPR001005SANT/Myb domain
PfamPF002498.2E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2281127IPR009057Homeodomain-like
CDDcd001673.95E-799122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEVEGSVISN SNSTMLQSDD ELDLRRGPWT VDEDLALINY IANHGEGRWN TLARSAGLKR  60
TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF KDAMRYLWMP RLVERIQAAA STSATLATAT NNGLPSGTTT  180
VTTNNTPYNI NNNFDVHSDA NMLTPTIMNT NSLCGSHVAQ SYTPENSSNG AAAASSDSFG  240
TQVSPISELT QDYYNVPVGS NNNNNPNSDY YQQAQQFGFF DCITSPSGLF PQMDFNSMEP  300
NTPWIQGDTS DNFWNVENML LFQHPNDNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26231261103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.222680.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g033170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684800.0EF468480.1 Medicago truncatula MYB transcription factor MYB39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594670.10.0transcription factor MYB78
SwissprotQ2QZJ82e-90JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLG7IL360.0G7IL36_MEDTR; Myb transcription factor
STRINGAES649210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-84myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  4. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  5. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  6. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]