PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g033170.1 | ||||||||
Common Name | MTR_2g033170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37139.1 Da PI: 5.6419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W+t ar g++Rt+k+c++rw++yl Medtr2g033170.1 26 RGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Medtr2g033170.1 79 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.102 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-11 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.95E-7 | 99 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEVEGSVISN SNSTMLQSDD ELDLRRGPWT VDEDLALINY IANHGEGRWN TLARSAGLKR 60 TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW 120 RTRVQKHAKQ LKCDVNSKQF KDAMRYLWMP RLVERIQAAA STSATLATAT NNGLPSGTTT 180 VTTNNTPYNI NNNFDVHSDA NMLTPTIMNT NSLCGSHVAQ SYTPENSSNG AAAASSDSFG 240 TQVSPISELT QDYYNVPVGS NNNNNPNSDY YQQAQQFGFF DCITSPSGLF PQMDFNSMEP 300 NTPWIQGDTS DNFWNVENML LFQHPNDNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-26 | 23 | 126 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22268 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g033170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF468480 | 0.0 | EF468480.1 Medicago truncatula MYB transcription factor MYB39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594670.1 | 0.0 | transcription factor MYB78 | ||||
Swissprot | Q2QZJ8 | 2e-90 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | G7IL36 | 0.0 | G7IL36_MEDTR; Myb transcription factor | ||||
STRING | AES64921 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-84 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g033170.1 |
Entrez Gene | 11417084 |