PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g031870.1
Common NameMTR_2g031870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 298aa    MW: 33567.3 Da    PI: 9.6638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g031870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++W++eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
  Medtr2g031870.1  5 KQKWSEEEESALKAGVIKHGVGKWRTILKDPEfnhvlYLRSNVDLKDKWRNL 56
                     79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791161IPR017930Myb domain
SuperFamilySSF466893.98E-15266IPR009057Homeodomain-like
SMARTSM007175.3E-7459IPR001005SANT/Myb domain
PfamPF002497.7E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12556IPR009057Homeodomain-like
CDDcd116607.31E-18656No hitNo description
Gene3DG3DSA:1.10.10.102.5E-14119190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.8E-12119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-16119197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.191121189IPR005818Linker histone H1/H5, domain H15
PfamPF005381.8E-7126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGVPKQKWSE EEESALKAGV IKHGVGKWRT ILKDPEFNHV LYLRSNVDLK DKWRNLSVMA  60
SGWASREKPK GAMKRVHYQA PRHEDNSMAV TPFFLSDDEI VDVQPLQVSR DMLQISGPKS  120
SSIRLDNLIM EAISSLNELG GSNKTTIASF IEDHYWAPAD FKKLLSAKLK YLTSRGKLIK  180
VKRRYRIAPT PAYSDRGRHP STLLLEGRQK GSMKFYRDES NIPTKSEIDL ELEKIRSMSA  240
QEAAAYAARA VAEAEALMAE AEEATKEAEA AEAEADAMEA FVEAERKRLK EKNTQRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.76480.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g031870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1377200.0BT137720.1 Medicago truncatula clone JCVI-FLMt-13E3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463066.10.0telomere repeat-binding factor 1
RefseqXP_024633091.10.0telomere repeat-binding factor 1
SwissprotQ8VWK41e-86TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A072VG040.0A0A072VG04_MEDTR; Myb transcription factor
STRINGXP_004486503.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-87telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]