PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030600.1
Common NameMTR_2g030600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 693aa    MW: 77727.8 Da    PI: 6.9118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.29.3e-162980556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++t+ q+ +L+++ +++++p++++r +LA k+gL+ +q+k WFqN+Ra  k
  Medtr2g030600.1 29 KRLTSAQTSILKNFMKECHHPDEAQRCQLAVKIGLEPKQIKSWFQNKRAMLK 80
                     5689********************************************9766 PP
2START118.31e-372134353206
                      HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                        +a++elv+++ ++ep+Wvk s       + ++ + q f++++         e ++ sg+v     +lv  +ld   +W++ ++    kaet+
  Medtr2g030600.1 213 VDAAMDELVRLVRVDEPFWVKPSntqdgYTLHRENYEQVFPKNNHfkgayVCEESSKYSGLVKISGIELVGMFLDLV-KWTNLFPtivtKAETI 305
                      6789******************96655533444444444444433787875568899**********9******999.99999999999***** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      +v + g      gal lm+ e+  lsplv  R+f ++Ry+++   g+wvi dvS ds ++++  +++ R+ ++pSg++i++++ g++ vtwveh
  Medtr2g030600.1 306 KVFEIGsrgsrdGALLLMNEEMHILSPLVRpREFNIIRYCKKVDPGVWVITDVSFDSSRPNT--APLSRGWKHPSGCIIREMPHGGCLVTWVEH 397
                      ***999999******************9866****************************986..7***************************** PP

                      EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      v++++++  h+++r lv+     ga  w + lqr ce+
  Medtr2g030600.1 398 VEVEDKIHtHYVYRDLVGEYNLYGAESWIKELQRMCER 435
                      ******999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.2042282IPR001356Homeobox domain
SuperFamilySSF466893.43E-162488IPR009057Homeodomain-like
SMARTSM003891.1E-152486IPR001356Homeobox domain
PfamPF000462.4E-132980IPR001356Homeobox domain
CDDcd000861.29E-153083No hitNo description
Gene3DG3DSA:1.10.10.601.0E-153087IPR009057Homeodomain-like
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084835.385202438IPR002913START domain
SuperFamilySSF559615.5E-30202435No hitNo description
CDDcd088751.15E-79206434No hitNo description
SMARTSM002345.1E-25211435IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-10211403IPR023393START-like domain
PfamPF018522.1E-31213435IPR002913START domain
SuperFamilySSF559611.44E-9458605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MDYSIGGGSE SGEEVNGNFR DDGKKPSHKR LTSAQTSILK NFMKECHHPD EAQRCQLAVK  60
IGLEPKQIKS WFQNKRAMLK HQHERETNGT LRRENDKIRN ENLKIKEELK AKICLDCGGS  120
PFPMKDHQNF VQEMKQENAQ LKQEAMSSLL ASYMEKKISR PEFEQALKSI KSFPRDYECS  180
SHMQGNLVMW GGVLGQTSTQ NYDAQKITMS QVVDAAMDEL VRLVRVDEPF WVKPSNTQDG  240
YTLHRENYEQ VFPKNNHFKG AYVCEESSKY SGLVKISGIE LVGMFLDLVK WTNLFPTIVT  300
KAETIKVFEI GSRGSRDGAL LLMNEEMHIL SPLVRPREFN IIRYCKKVDP GVWVITDVSF  360
DSSRPNTAPL SRGWKHPSGC IIREMPHGGC LVTWVEHVEV EDKIHTHYVY RDLVGEYNLY  420
GAESWIKELQ RMCERSLGSN VEAIPVEETI GVIQTLEGRN SVIKLADRMV KMFCECLTMP  480
GQVELNHLTL DSIGGVRVSI RATTDDDASQ PNGTVVTAAT TLWLPLPAQK VFEFLKDPTK  540
RSQWNGLSCG NPMHEIAHIS NGPYHGNCIS VIKSFIPTQR QMVILQESFT SSVGSYVIYA  600
PIDRKTMDVA LRGEDSKELP ILPYGLIVCS KNQANLNAPF GASKSIEDGS LITLAAQTYA  660
IGQVLNVDSL NDINSQLAST ILNVKDALMS SI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.108930.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470100.0AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632687.10.0homeobox-leucine zipper protein HDG11
TrEMBLG7IKY10.0G7IKY1_MEDTR; Homeobox leucine zipper protein, putative
STRINGAES648120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-154homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]