PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030570.1
Common NameMTR_2g030570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 700aa    MW: 78702.6 Da    PI: 6.5452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.29e-162980556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++t+ q+ +L+++ +++++p+++er +LA ++gL+ +q+k+WFqN+R+  k
  Medtr2g030570.1 29 KRLTSAQTSILKNFMKECHHPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLK 80
                     6799********************************************8665 PP
2START126.24.1e-402154373206
                      HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                        +a++elv+++ ++ep+Wvks+ + +  ++  +++ ++v              e ++ sg+v     +lv  +ld+  +W++ ++    kaet
  Medtr2g030570.1 215 VDAAMDELVRLVRVNEPFWVKSP-NTQDGYTFHRESYEQVfpknnhfkganVCEESSKYSGLVKISGIDLVGMFLDSV-KWTNLFPtivtKAET 306
                      6789*******************.333333334444444455555788877556899*********************.****99999999999 PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      ++v + g      gal lm+ e+  lsplv  R+f ++Ry+++  ag+wvi+dvS ds ++++  +++ R+ ++pSg++i++++ g++ vtwve
  Medtr2g030570.1 307 IKVFEIGspgsrdGALLLMNEEMHILSPLVRpREFNIIRYCKKFDAGVWVIADVSFDSSRPNT--APLSRGWKHPSGCIIREMPHGGCLVTWVE 398
                      9999999999******************9866****************************986..7**************************** PP

                      -EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      hv++++++  h+++r lv++    ga  w + lqr ce+
  Medtr2g030570.1 399 HVEVEDKIHtHYVYRDLVGNYNLYGAESWIKELQRMCER 437
                      *******999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-16979IPR009057Homeodomain-like
PROSITE profilePS5007114.2682282IPR001356Homeobox domain
SMARTSM003893.5E-132486IPR001356Homeobox domain
SuperFamilySSF466896.27E-162588IPR009057Homeodomain-like
CDDcd000861.46E-142583No hitNo description
PfamPF000462.6E-132980IPR001356Homeobox domain
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084835.752204440IPR002913START domain
SuperFamilySSF559612.33E-29204437No hitNo description
CDDcd088751.58E-84208436No hitNo description
SMARTSM002342.8E-26213437IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-11213405IPR023393START-like domain
PfamPF018522.1E-33215437IPR002913START domain
SuperFamilySSF559614.81E-8460608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MDYSIGGGSE SGEEVNGNFR DDGEKSSHKR LTSAQTSILK NFMKECHHPD EAERHQLAVE  60
VGLEPKQIKF WFQNKRTLLK HQHERETNGT LRRENDKIRN ENLKIKEVLK AKICLDCGGP  120
PFPMKDHQNF VQDLKQENAQ LKQECEKMSS LLASYMEKKI SRPEFEQALK SIKSFSRDYE  180
CSSHVHGNLA TWGGVLGQTS TQNYDAQKIT MSQVVDAAMD ELVRLVRVNE PFWVKSPNTQ  240
DGYTFHRESY EQVFPKNNHF KGANVCEESS KYSGLVKISG IDLVGMFLDS VKWTNLFPTI  300
VTKAETIKVF EIGSPGSRDG ALLLMNEEMH ILSPLVRPRE FNIIRYCKKF DAGVWVIADV  360
SFDSSRPNTA PLSRGWKHPS GCIIREMPHG GCLVTWVEHV EVEDKIHTHY VYRDLVGNYN  420
LYGAESWIKE LQRMCERSLG SYVEAIPVEE TIGVIQTLEG RNSVIKLAQR MVKMFCESLT  480
MPGQLELNHL TLASIGGIRV SFRSTTDDDT SQPNGTIVTA ATTLWLPLPA LKVFEFLKDP  540
TKRSQWDGLS CGNPMHEIAH ISNGPYHGNC ISIIKPFIPT QRQMMILQES FTSRVGSYII  600
YAPSDRQTMD VALRGEDSKE LPILPYGFVV CSKSQPNLNA PFGASNNIED GSLLTLAAQI  660
LSTSPHEIDQ VLNVEDITDI NTHLATTILN VKDALMSSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.108931e-155root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470100.0AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632687.10.0homeobox-leucine zipper protein HDG11
TrEMBLG7IKX90.0G7IKX9_MEDTR; Homeobox leucine zipper protein
STRINGAES648100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-156homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]