PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g017890.1 | ||||||||
Common Name | MTR_2g017890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 384aa MW: 43616.9 Da PI: 4.8022 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.1 | 1.4e-33 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ed++++ ++sw ++ +sf+v+++e+f+k++L++yF h+nf+SF+RQLn+YgF+k++++ we++++ F +++k+l++ Medtr2g017890.1 16 FLTKTYNMVEDPSTDAIVSWGATDKSFIVWNKEDFEKDLLSRYFNHNNFSSFIRQLNTYGFRKIDTQL---------WEYANDDFVRNQKHLMK 100 9********************999****************************************9877.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k+ Medtr2g017890.1 101 NIQRRKT 107 *****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-37 | 6 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-33 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.2E-55 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-18 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-18 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MMEEAQGSSS DKVPPFLTKT YNMVEDPSTD AIVSWGATDK SFIVWNKEDF EKDLLSRYFN 60 HNNFSSFIRQ LNTYGFRKID TQLWEYANDD FVRNQKHLMK NIQRRKTVYS HSSQNADGQG 120 VAAPLAESDR QTLNAYVQNL KHDREQMFLE IQRKEEVKKM NEITSQYMKG HLETLEKKHQ 180 SVLSSVGQVL KKPGKKEQKR KIPRNNPFCY VASTEDHVGT SHVIHKENDP GVSRLSLNLE 240 QLDLLDSSMT FWEEITNDVG AEVQPKSLEV DMNSMPVVVV PDPVATETDV VVIPNHVATE 300 LDVIVVPNPV ATEPAVINAS DLVAVDPTVA VVPDFVEPKE QPVVTSLVTT DYNNEFWGQY 360 LQDESENEDI PSRVGQYWQT KRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-23 | 8 | 107 | 21 | 131 | Heat shock factor protein 1 |
5d5v_B | 3e-23 | 8 | 107 | 21 | 131 | Heat shock factor protein 1 |
5d5v_D | 3e-23 | 8 | 107 | 21 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g017890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593809.2 | 0.0 | heat stress transcription factor A-4a | ||||
TrEMBL | G7ILT3 | 0.0 | G7ILT3_MEDTR; Heat shock transcription factor A4A | ||||
STRING | AES64060 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 4e-58 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g017890.1 |
Entrez Gene | 11439776 |
Publications ? help Back to Top | |||
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