PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g017890.1
Common NameMTR_2g017890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 384aa    MW: 43616.9 Da    PI: 4.8022
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g017890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++ ++sw ++ +sf+v+++e+f+k++L++yF h+nf+SF+RQLn+YgF+k++++          we++++ F +++k+l++
  Medtr2g017890.1  16 FLTKTYNMVEDPSTDAIVSWGATDKSFIVWNKEDFEKDLLSRYFNHNNFSSFIRQLNTYGFRKIDTQL---------WEYANDDFVRNQKHLMK 100
                      9********************999****************************************9877.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  Medtr2g017890.1 101 NIQRRKT 107
                      *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-376100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5512105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMEEAQGSSS DKVPPFLTKT YNMVEDPSTD AIVSWGATDK SFIVWNKEDF EKDLLSRYFN  60
HNNFSSFIRQ LNTYGFRKID TQLWEYANDD FVRNQKHLMK NIQRRKTVYS HSSQNADGQG  120
VAAPLAESDR QTLNAYVQNL KHDREQMFLE IQRKEEVKKM NEITSQYMKG HLETLEKKHQ  180
SVLSSVGQVL KKPGKKEQKR KIPRNNPFCY VASTEDHVGT SHVIHKENDP GVSRLSLNLE  240
QLDLLDSSMT FWEEITNDVG AEVQPKSLEV DMNSMPVVVV PDPVATETDV VVIPNHVATE  300
LDVIVVPNPV ATEPAVINAS DLVAVDPTVA VVPDFVEPKE QPVVTSLVTT DYNNEFWGQY  360
LQDESENEDI PSRVGQYWQT KRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23810721131Heat shock factor protein 1
5d5v_B3e-23810721131Heat shock factor protein 1
5d5v_D3e-23810721131Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g017890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593809.20.0heat stress transcription factor A-4a
TrEMBLG7ILT30.0G7ILT3_MEDTR; Heat shock transcription factor A4A
STRINGAES640600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-58heat shock transcription factor A4A
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]