PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g006900.1
Common NameMTR_2g006900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 105aa    MW: 11703.5 Da    PI: 10.439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g006900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA252.6e-084060220
             GATA  2 s..nCgttkTplWRrgpdgnk 20
                     +  +C+t +Tp+WR+gp g+k
  Medtr2g006900.1 40 TnfHCKTRNTPMWRSGPMGPK 60
                     5559**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.7E-53681IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MYCTDSFHVR ADQEMPLGVG RRRYIRRGRA RPSDPTTFCT NFHCKTRNTP MWRSGPMGPK  60
ETHYLLIIVS VFYKKHMVRR DVPAASGSVP PPGTMGGDPS SSTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g006900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1927073e-96AC192707.2 Medicago truncatula chromosome 2 BAC clone mte1-59k12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027185991.13e-13GATA zinc finger domain-containing protein 7-like
TrEMBLG7IPG22e-71G7IPG2_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES632726e-73(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2017433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-06GATA transcription factor 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]