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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g006150.1 | ||||||||
Common Name | MTR_2g006150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 488aa MW: 51820.4 Da PI: 6.7754 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.6 | 8.8e-42 | 125 | 284 | 3 | 136 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Medtr2g006150.1 125 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksapl 218 5699****************************************************************99988889999988666667777788 PP TCP 89 ..................kaaksaa.kskksqksaasalnlakesr...akarar.arertrekmriknkl 136 + +a + ++++++ ++l++ + a ++++ r+r re+ ++++++ Medtr2g006150.1 219 sfhsalalahhpyeeaayQ----HApLLGFHPHQHHQ-QQLMNADQigeALSNENyMRKRYREDLFKEDNN 284 8888777777777754331....22222222222221.222221112222222223444555555554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-40 | 129 | 277 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 130 | 184 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MELSDLQNNK QKRGTTNIHP HHQQQESSSP SNSHHQQLVV PFDGRPSPFI MGSISNIQPS 60 SNSSPSNSSS SSASASASAS APTQHLIDAS LAIATRSEPP LPDVSNNQIQ PFSSTSTTVT 120 AVANPPKRST KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPA 180 IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPLSF HSALALAHHP YEEAAYQHAP 240 LLGFHPHQHH QQQLMNADQI GEALSNENYM RKRYREDLFK EDNNNQNESG GDGDGSSSPK 300 SFKTNHQQQD DMGEGDGGGG GASSSSSIGN SFSGLLRPSN MLPATAMWAT AGSGSTIWMV 360 PVSGGAATSN SETQTQNMWP FNPHVQSQNQ GNAAVTPSQL HFMPRFNVPA SGGVEFQGGR 420 GGLQLGSAYQ PSQHLGLAVS DSNMGMFAAL NAYNRAAHFN VNNSSDHHQQ QPQPNDESGE 480 DAPNTSQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10567 | 0.0 | root | ||||
Mtr.21319 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g006150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134322 | 0.0 | AC134322.25 Medicago truncatula clone mth2-17i21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592963.1 | 0.0 | transcription factor TCP8 isoform X1 | ||||
TrEMBL | G7INN6 | 0.0 | G7INN6_MEDTR; TCP family transcription factor | ||||
STRING | AES63214 | 0.0 | (Medicago truncatula) | ||||
STRING | AES63253 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 5e-68 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g006150.1 |
Entrez Gene | 11424191 |
Publications ? help Back to Top | |||
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