PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2157s0010.1
Common NameMTR_2157s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 266aa    MW: 30458.6 Da    PI: 9.242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2157s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-5381361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yL+k++++ ++++ ++i+evdiyk++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ 
  Medtr2157s0010.1   8 LPPGFRFHPTDEELILHYLCKRTASAPCPV-QIIAEVDIYKFNPWDLPAKAMFGEREWYFFSPRDRKYPNGFRPNRAAGSGYWKATGTDKPIR 99 
                       79****************************.89***************8878899*************************************9 PP

               NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl
  Medtr2157s0010.1 100 ASrsRKENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 136
                       98777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-644168IPR003441NAC domain
PROSITE profilePS5100560.5218168IPR003441NAC domain
PfamPF023658.4E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSHASPPLPP GFRFHPTDEE LILHYLCKRT ASAPCPVQII AEVDIYKFNP WDLPAKAMFG  60
EREWYFFSPR DRKYPNGFRP NRAAGSGYWK ATGTDKPIRA SRSRKENIGV KKALVFYKGK  120
PPKGVKTNWI MHEYRLSEAL HKSYSKPSKT SEAPMRLDDW VLCRIYQKSG HHPLPERKEE  180
DSGVQTLTNT NKMHKSFSIS DLLINDVDFS LLSRMLETPL NGHLADHALL SNSNTNPFFA  240
ENNSGSYLVT ESEDPVFVNK HCFEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-74816815168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2157s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441095.20.0NAC transcription factor 29
SwissprotA2YMR01e-84NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A072TNF60.0A0A072TNF6_MEDTR; NAC transcription factor-like protein (Fragment)
STRINGGSMUA_AchrUn_randomP17360_0011e-105(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-85NAC domain containing protein 47
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]