PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2157s0010.1 | ||||||||
Common Name | MTR_2157s0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 30458.6 Da PI: 9.242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.4e-53 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yL+k++++ ++++ ++i+evdiyk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ Medtr2157s0010.1 8 LPPGFRFHPTDEELILHYLCKRTASAPCPV-QIIAEVDIYKFNPWDLPAKAMFGEREWYFFSPRDRKYPNGFRPNRAAGSGYWKATGTDKPIR 99 79****************************.89***************8878899*************************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl Medtr2157s0010.1 100 ASrsRKENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 136 98777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-64 | 4 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 8 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSHASPPLPP GFRFHPTDEE LILHYLCKRT ASAPCPVQII AEVDIYKFNP WDLPAKAMFG 60 EREWYFFSPR DRKYPNGFRP NRAAGSGYWK ATGTDKPIRA SRSRKENIGV KKALVFYKGK 120 PPKGVKTNWI MHEYRLSEAL HKSYSKPSKT SEAPMRLDDW VLCRIYQKSG HHPLPERKEE 180 DSGVQTLTNT NKMHKSFSIS DLLINDVDFS LLSRMLETPL NGHLADHALL SNSNTNPFFA 240 ENNSGSYLVT ESEDPVFVNK HCFEEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-74 | 8 | 168 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2157s0010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441095.2 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | A2YMR0 | 1e-84 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A072TNF6 | 0.0 | A0A072TNF6_MEDTR; NAC transcription factor-like protein (Fragment) | ||||
STRING | GSMUA_AchrUn_randomP17360_001 | 1e-105 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 4e-85 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2157s0010.1 |
Entrez Gene | 25485868 |
Publications ? help Back to Top | |||
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