PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g116920.1 | ||||||||
Common Name | MTR_1g116920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 299aa MW: 34608.4 Da PI: 9.8393 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.6 | 1.3e-07 | 40 | 84 | 4 | 54 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 kGV ++g W A+I+ + +r++lg+f ++ +Aa a++ a kl+ Medtr1g116920.1 40 KGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSERDAAMAYDSATIKLR 84 6774.455788****999......44**********99********999987 PP | |||||||
2 | B3 | 88.8 | 4.5e-28 | 162 | 246 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pkk+a ++ ++ ++++++++d+ r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++vF++ Medtr1g116920.1 162 FQKELTPSDVGKLNRLVVPKKHAVTYfPLVCGNDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYR 246 99*************************88888999************************************************94 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.0E-15 | 38 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-14 | 38 | 95 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.89E-20 | 38 | 95 | No hit | No description |
PROSITE profile | PS51032 | 15.988 | 38 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-15 | 40 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-32 | 156 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-27 | 160 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-26 | 161 | 246 | No hit | No description |
SMART | SM01019 | 5.3E-21 | 162 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-26 | 162 | 246 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 162 | 268 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MLSNWRINGS YESSESTKIN YGVKRRRYEV EDVAGCEKLK GVVPQQNGHW GAQIYANHQR 60 IWLGTFKSER DAAMAYDSAT IKLRSRESHR NFAWNNQTVQ EPMFQSQYSM ETIMIMIRNG 120 TYPSNFATTF LRNNERRQGA GKEGVVIGVK DEEQFSCTQL LFQKELTPSD VGKLNRLVVP 180 KKHAVTYFPL VCGNDVEVVF YDKLMRLWKF RYCYWKSSQS YVFTRGWNRF VKDKKLKAKD 240 TIVFYRCEPI NLTNNNGERL PLSLIDVIYS DIDGNNKKIH SFEDAKHGGL RLFGVSIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-28 | 158 | 247 | 10 | 103 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g116920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592857.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Swissprot | Q9C688 | 8e-89 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | G7IB22 | 0.0 | G7IB22_MEDTR; AP2/ERF and B3 domain transcription factor | ||||
STRING | AES63108 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51120.1 | 3e-91 | RAV family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g116920.1 |
Entrez Gene | 11446763 |
Publications ? help Back to Top | |||
---|---|---|---|
|