PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g116920.1
Common NameMTR_1g116920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family RAV
Protein Properties Length: 299aa    MW: 34608.4 Da    PI: 9.8393
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g116920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-074084454
              AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     kGV    ++g W A+I+       + +r++lg+f ++ +Aa a++ a  kl+
  Medtr1g116920.1 40 KGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSERDAAMAYDSATIKLR 84
                     6774.455788****999......44**********99********999987 PP
2B388.84.5e-28162246184
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+ltpsdv+k++rlv+pkk+a ++  ++  ++++++++d+  r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++vF++
  Medtr1g116920.1 162 FQKELTPSDVGKLNRLVVPKKHAVTYfPLVCGNDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYR 246
                      99*************************88888999************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-153899IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-143895IPR016177DNA-binding domain
CDDcd000183.89E-203895No hitNo description
PROSITE profilePS5103215.9883893IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-154093IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-32156248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-27160249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-26161246No hitNo description
SMARTSM010195.3E-21162268IPR003340B3 DNA binding domain
PfamPF023625.0E-26162246IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942162268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLSNWRINGS YESSESTKIN YGVKRRRYEV EDVAGCEKLK GVVPQQNGHW GAQIYANHQR  60
IWLGTFKSER DAAMAYDSAT IKLRSRESHR NFAWNNQTVQ EPMFQSQYSM ETIMIMIRNG  120
TYPSNFATTF LRNNERRQGA GKEGVVIGVK DEEQFSCTQL LFQKELTPSD VGKLNRLVVP  180
KKHAVTYFPL VCGNDVEVVF YDKLMRLWKF RYCYWKSSQS YVFTRGWNRF VKDKKLKAKD  240
TIVFYRCEPI NLTNNNGERL PLSLIDVIYS DIDGNNKKIH SFEDAKHGGL RLFGVSIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2815824710103DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g116920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592857.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6888e-89RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLG7IB220.0G7IB22_MEDTR; AP2/ERF and B3 domain transcription factor
STRINGAES631080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-91RAV family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]