PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g108500.1 | ||||||||
Common Name | MTR_1g108500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 335aa MW: 36733.6 Da PI: 8.3891 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.4 | 1.8e-18 | 111 | 152 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n qvtfskRr g++KK +E ++LC+++va+++fs++ k++ + Medtr1g108500.1 111 NLQVTFSKRRSGLFKKVSEFCTLCGVDVALVVFSPSEKVFSF 152 679***********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 1.1E-9 | 98 | 118 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-18 | 99 | 155 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-21 | 111 | 152 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.58E-20 | 111 | 155 | No hit | No description |
PROSITE profile | PS50066 | 17.409 | 111 | 156 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-18 | 111 | 160 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-9 | 118 | 133 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-9 | 133 | 154 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MDGKGNNSNV GGGAANNPKD NVGATTKGDT MKAPGGDGSN ISREEFEKNP QGYFADLHAA 60 QKDKELNNAF GAGDNKFKLN ATPTHYDVDK LAVRIKDEVA CKKGSFRMVA NLQVTFSKRR 120 SGLFKKVSEF CTLCGVDVAL VVFSPSEKVF SFGHPNVDTA HRSAKVCELN VELIQINNTL 180 DEEKKGSAAP SYHFGFYLSR HFSLSSSSLR FFICLSSLTK IAWTAVMWLS LKIVSDFKRT 240 LDNLSFEIIP KKNFSFKILD SAQLSFTVRD SPGFRNKTGE VLIGEFNESE VGEFTISDLD 300 SCEVRITGCI RVRSRPIVED CNGVSKSYQG IVNL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g108500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144731 | 1e-101 | AC144731.15 Medicago truncatula clone mth2-5g18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7IAT7 | 0.0 | G7IAT7_MEDTR; MADS-box transcription factor family protein, putative | ||||
STRING | AES62808 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-23 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g108500.1 |
Entrez Gene | 11444468 |
Publications ? help Back to Top | |||
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