PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106460.2
Common NameMTR_1g106460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 280aa    MW: 30895.5 Da    PI: 6.0445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106460.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.6e-062542731029
                      HHHHHHHHHHHHHHHCTSCC CS
              HLH  10 rrRRdriNsafeeLrellPk 29 
                      ++RR+riN+++  L++l+P+
  Medtr1g106460.2 254 KKRRERINERLKILQSLVPN 273
                      89*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.464244279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-5251276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.87E-4253278No hitNo description
Gene3DG3DSA:4.10.280.102.9E-4254274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSGEQSCEE WSSLSGFYTA EEADFMGQLL NNFQVSEHHY GNFNLEIPST SWPGHESKIV  60
SMNSSSHFPQ NADNSNTDVF SFLQSSSISD TSNIFHNTNG GNICLNDHVA NIGYMNANIS  120
TYSVQGNDSQ QITENTSEEF GQDVSESAKE AIKNNLEKSG KRSRSSMKVQ KNKRNVKSRK  180
KPKSAFKSNA DEDESHDLQE QNLSSEDDDF NASQKLNAGT SSILNQNDSP DLKLKGKSRC  240
NGGSASDPQG VYAKKRRERI NERLKILQSL VPNGTKHHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253264KKRRERINERLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592480.10.0transcription factor bHLH139
TrEMBLA0A072VRG50.0A0A072VRG5_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES627310.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-23bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]