PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g102860.1
Common NameMTR_1g102860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 331aa    MW: 38370.3 Da    PI: 5.3432
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g102860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35411332103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+i++d+++++++sws+ +nsfvv+d++ f+  +Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F kg+k ll+
  Medtr1g102860.1  41 FLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADR---------WEFANEMFLKGQKILLK 125
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k +
  Medtr1g102860.1 126 NIRRRKAN 133
                      *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.01E-3436130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5837130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3737130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNMNPHHGGM KEEFVGGSSS FSVVGEPQPR EGLHENGPPP FLTKTYDIVD DPSTNHIVSW  60
STGNNSFVVW DPQAFSIILL PRFFKHNNFS SFVRQLNTYG FKKVDADRWE FANEMFLKGQ  120
KILLKNIRRR KANQSQVMQA LDPSCVELGR FGSDGIEVDR LRRDRQVLMV ELVKLRQQQQ  180
NTRTHLEAME GRLKRSEQKQ KQMMNFLARA IQNPNFLQQL VQQKEWRKEL EEIFSKKRRR  240
TIDQGPSNVE AGDELGYVDK ECLNFVKLET HQDVEEDSNQ INQLEVRDKE IDIEVFWQDL  300
FKEGIEDEVD IEDVDVLAEQ LGYLASSPPK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-233913518125Heat shock factor protein 1
5d5u_B1e-233913027129Heat shock factor protein 1
5d5v_B1e-233913027129Heat shock factor protein 1
5d5v_D1e-233913027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g102860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469753.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A072VQ540.0A0A072VQ54_MEDTR; Heat shock transcription factor A3
STRINGGLYMA20G28870.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]