PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g102860.1 | ||||||||
Common Name | MTR_1g102860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 331aa MW: 38370.3 Da PI: 5.3432 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.3 | 3.2e-35 | 41 | 133 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+i++d+++++++sws+ +nsfvv+d++ f+ +Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F kg+k ll+ Medtr1g102860.1 41 FLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADR---------WEFANEMFLKGQKILLK 125 9****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+k + Medtr1g102860.1 126 NIRRRKAN 133 *****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.01E-34 | 36 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.0E-58 | 37 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-37 | 37 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.6E-19 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-30 | 41 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 80 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-19 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MNMNPHHGGM KEEFVGGSSS FSVVGEPQPR EGLHENGPPP FLTKTYDIVD DPSTNHIVSW 60 STGNNSFVVW DPQAFSIILL PRFFKHNNFS SFVRQLNTYG FKKVDADRWE FANEMFLKGQ 120 KILLKNIRRR KANQSQVMQA LDPSCVELGR FGSDGIEVDR LRRDRQVLMV ELVKLRQQQQ 180 NTRTHLEAME GRLKRSEQKQ KQMMNFLARA IQNPNFLQQL VQQKEWRKEL EEIFSKKRRR 240 TIDQGPSNVE AGDELGYVDK ECLNFVKLET HQDVEEDSNQ INQLEVRDKE IDIEVFWQDL 300 FKEGIEDEVD IEDVDVLAEQ LGYLASSPPK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 39 | 135 | 18 | 125 | Heat shock factor protein 1 |
5d5u_B | 1e-23 | 39 | 130 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 39 | 130 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 39 | 130 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 164 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g102860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469753.1 | 0.0 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-121 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A072VQ54 | 0.0 | A0A072VQ54_MEDTR; Heat shock transcription factor A3 | ||||
STRING | GLYMA20G28870.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-118 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g102860.1 |
Entrez Gene | 25485140 |
Publications ? help Back to Top | |||
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