PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g102380.1 | ||||||||
Common Name | MTR_1g102380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21557.9 Da PI: 7.5056 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.2 | 4.6e-06 | 23 | 70 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 e+E++RR ++ + Lr+ lP + ++K s ++ +A +Y++ L Medtr1g102380.1 23 RREVEKQRRMQMSILCSSLRSSLPFdL---IKGKRSVSDHIGEAANYVQIL 70 679**********************77...*****************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.16E-9 | 15 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.62E-4 | 18 | 74 | No hit | No description |
PROSITE profile | PS50888 | 10.302 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-6 | 21 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAEDQNQHKI LTTSDNDDKK MIRREVEKQR RMQMSILCSS LRSSLPFDLI KGKRSVSDHI 60 GEAANYVQIL KQKINELEIK RDKMKEMVSS SRVETGNELS ADPSSVVKCV KIDLIPGGVE 120 IVICSGLEDY SSRLSDLMKI ILQEGCDVVH CVTNQVNGKI FHTIKSEVED LAHLNLARLQ 180 NKLDHAILLS R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23333 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g102380.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149304 | 0.0 | AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592389.1 | 1e-137 | transcription factor bHLH118 | ||||
TrEMBL | G7ID50 | 1e-135 | G7ID50_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES62640 | 1e-136 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g102380.1 |
Entrez Gene | 11422874 |
Publications ? help Back to Top | |||
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