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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g102370.1 | ||||||||
Common Name | MTR_1g102370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 28130.2 Da PI: 9.4529 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 75 | 127 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h e+E++RR+++ + Lr+llP + ++K s ++ +Av+YI++L+ Medtr1g102370.1 75 KKMVHREIEKQRRQEMATLHTSLRSLLPLHF--IKGKRSLSDQMNEAVNYINHLK 127 6889*************************65..********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-11 | 73 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.008 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-7 | 74 | 128 | No hit | No description |
Pfam | PF00010 | 2.1E-7 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 75 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MFPLQRCNEL AKPLSNSLNH HQHHKISEDL ILDDCDSLVI DFSLKKMDTN RPPNKLFYID 60 RANHGSNRNS IEDKKKMVHR EIEKQRRQEM ATLHTSLRSL LPLHFIKGKR SLSDQMNEAV 120 NYINHLKKNM KELSYKRDEL KKLSNPSLKN KSHVSCSFTI HKNNRTVGIE ISTKTGFIEE 180 GAPLSKFLEQ LMRYGLDVVS CFSIQVNGKL LHSVQCEVIN SDSVDLTELR RNLSNLNPSF 240 SCSD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22395 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g102370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053223 | 0.0 | BT053223.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-D-18 unknown mRNA. | |||
GenBank | BT147835 | 0.0 | BT147835.1 Medicago truncatula clone JCVI-FLMt-10F5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592388.2 | 1e-179 | transcription factor bHLH118 isoform X2 | ||||
TrEMBL | G7ID49 | 1e-178 | G7ID49_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES62639 | 1e-168 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g102370.1 |
Entrez Gene | 11415125 |
Publications ? help Back to Top | |||
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