PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g098450.1 | ||||||||
Common Name | MTR_1g098450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 319aa MW: 37070.7 Da PI: 8.3843 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 249 | 287 | 61 | 99 |
E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +GWk+Fv +n+Lk+gD++vF+l++ + + v +fr+ Medtr1g098450.1 249 FCDGWKNFVTDNKLKQGDVCVFQLVEAPRLFFEVVIFRA 287 458********************9988666577777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-11 | 205 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-14 | 206 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.88E-11 | 207 | 286 | No hit | No description |
SMART | SM01019 | 0.0041 | 209 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-8 | 249 | 287 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.686 | 252 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MIFQVSESDT KFCKIIDEDC LGNDDLMITA LSSKFWDYIS SPVCLQLPDK TTWLLDWKQH 60 DDTHVLFNKW KAFAEPHIYP INIFNLSIFD ETDTEIEYPM LSSLFSPWET KTTKPAVSLY 120 HLNRMKKTNQ QEEPKGYLSL LAEICGQSPS QMTMPVEYAD FYTANPKKRG RRREVPYNTR 180 GSSTMKQRKV LGTGALERAK ACCSHIKSFI RQMRPSHIQR NVLVIPRNFL TTRQQQESAM 240 FWIVEAKRFC DGWKNFVTDN KLKQGDVCVF QLVEAPRLFF EVVIFRAREQ STPPHIQGTF 300 DLLQSNLQFL MHTYILAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g098450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150978 | 1e-158 | AC150978.15 Medicago truncatula clone mth2-66m17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7IBX1 | 0.0 | G7IBX1_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES62325 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g098450.1 |
Entrez Gene | 11420353 |
Publications ? help Back to Top | |||
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