PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g094115.1
Common NameMTR_1g094115
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 523aa    MW: 58063.9 Da    PI: 9.4621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g094115.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-055981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Medtr1g094115.1 59 FICEVCNKGFQREQNLQLHRRGH 81
                     89*******************88 PP
2zf-C2H212.70.00039135157123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Medtr1g094115.1 135 WKCEKCSKKYAVQSDWKAHSKTC 157
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.9E-55881IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.3E-55981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.995981IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-75981No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355160100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.61E-7130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAAASSSTSF FGIREENQSQ ITHHHPHPQS TTTSATSSAP STTVPQKKRR NQPGTPSKFI  60
CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK SNKEPRRKVY LCPEPTCVHH DPSRALGDLT  120
GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR  180
AFCDALAQES VLRHHNPFGS THQLYATNHH ISLGQISHQL QNHQNQITSS TSNNNNLLRL  240
GSAPPKFEQN LISSPPLNHS SSFGHSIPSS SPFFNMSDIS NQSFEEQQSQ QGQFLNKQLH  300
GLMHLPDLQG NTNTNNSNSS NLFNLMVHDQ FNNMSSTQGT TLYINNNSSL SDHQVGFVNS  360
MQHGQNMSSP HMSATALLQK ASQIGSTNST NNNKGSNNDH KSGDRDFVVS DHNNINATFG  420
NRSSSIENDH DNNDLHGLIN SIANGNTSSI FGNESNLNMR FGGSDKLTLD FLGVGGMVRN  480
MSGGFSQSEQ QRDMMNTSMV SLNHDLKSAH SSQHFGSSNI LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33131189361Zinc finger protein JACKDAW
5b3h_F7e-33131189361Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226660.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g094115.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1495300.0BT149530.1 Medicago truncatula clone JCVI-FLMt-13F5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469433.10.0protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_024640939.10.0protein indeterminate-domain 4, chloroplastic isoform X1
SwissprotQ8GYC11e-112IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A072VNU90.0A0A072VNU9_MEDTR; C2H2 zinc finger protein, putative
STRINGXP_004496222.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.26e-83C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]