![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g093600.1 | ||||||||
Common Name | MTR_1g093600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 385aa MW: 41767 Da PI: 9.2683 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.9e-14 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Medtr1g093600.1 62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 110 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 89.8 | 2.2e-28 | 192 | 298 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ tpsdv+k++rlv+pk++ae+h +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++g Medtr1g093600.1 192 FEKTVTPSDVGKLNRLVIPKQHAEKHfplnavavavacdgvstAAAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAG 285 99***************************9999999998777744555899******************************************* PP -EEEEEE-SSSEE CS B3 78 DfvvFkldgrsef 90 D v F ++ ++ Medtr1g093600.1 286 DAVRFFRSTGPDR 298 ***9986544555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.20E-25 | 62 | 116 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-16 | 62 | 116 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-8 | 62 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-19 | 63 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.902 | 63 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-26 | 63 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-39 | 185 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-28 | 190 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.24E-27 | 191 | 293 | No hit | No description |
Pfam | PF02362 | 1.3E-25 | 192 | 298 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 192 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-22 | 192 | 307 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MELGGSSTDE TVTSNDSLSA NLSTPPPTLN SLSRVGSAAS SVVDPEIYGV SGEAESRKLP 60 SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAALRFRG KDAVTNSKSL 120 TGVGNDADEG ETEFLNSHSK SEIVDMLRKH TYDDELKQSM RDMSGGRQRR NGELNGAVSR 180 GACDAKAREQ LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL NAVAVAVACD GVSTAAAAAK 240 GLLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDAVRF FRSTGPDRQL 300 YIDCKARSIG VVGGQVDNNN NNTGGLFITV RPVVEPVQMV RLFGVNLLKL PGSEGVGGSC 360 NGKRKEMELF ALECSKKPKI IGAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-54 | 189 | 308 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 362 | 378 | KRKEMELFALECSKKPK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.3967 | 0.0 | flower| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g093600.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591822.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 1e-137 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | G7I492 | 0.0 | G7I492_MEDTR; AP2/ERF and B3 domain transcription factor | ||||
STRING | AES62073 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-139 | RAV family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g093600.1 |
Entrez Gene | 11422381 |