PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g090723.1 | ||||||||
Common Name | MTR_1g090723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 631aa MW: 70012.5 Da PI: 4.1698 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.4e-49 | 10 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdee+v +yLkkk++g+ ++++ ++ +diyk+ePwdLpk k+k+++ ewyfF+ dkky ++ r+nrat++gyWk+tgkd+++++ Medtr1g090723.1 10 PGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPKlsKLKTRDLEWYFFTALDKKYGNSIRTNRATDRGYWKTTGKDRAIKN 103 8*********************************************5457888888*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+kktLv+++grap+g +++Wvmheyr+ Medtr1g090723.1 104 -GEETVGMKKTLVYHSGRAPHGDRSNWVMHEYRM 136 .99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-57 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.048 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MEETAFYQGP GFRFHPTDEE IVRYYLKKKL TGNLPSCFDY LAVIDIYKFE PWDLPKLSKL 60 KTRDLEWYFF TALDKKYGNS IRTNRATDRG YWKTTGKDRA IKNGEETVGM KKTLVYHSGR 120 APHGDRSNWV MHEYRMIDET LAKAGVQKDA YVLCRIFEKS GSGPKNGEKY GAPFVEEEWE 180 SFGEQVLPLP PVDNEPLKLE GFTPDVDELV NPLAVSVPDD VLVDPLDVFY DELWNENLPD 240 STYEDFFEAH DLDQDLVTSN TVGSAELQSN FCYGECSTHP QYSQAFINER KQSEATLGVY 300 EYEVDQPNNI ADLYGGNINS VQDGYNGGTN HNENPLNFNF ASEVDQPNNI ADLYGGNINS 360 VQDGYNGGTN HNENPLNFNF ASEDLGQVFH APDYITGVTD EYMETNDIAE MDPSVAAMLD 420 GSLADPDDDI SNYICFDSPL NARSESPIAS YGQPIIEQNV EGETYDSSLT NKHVFEAQPS 480 DEVLPKEDLA ASNWVSGDAN TFVKHLLANI PAPPAFASEF PAKELACEIH PAAESSNSAH 540 ITAGMISITD ITFRGNAMDW MVGKNGGFNT VMSTGFSQTD VNPATLVPIS GLVCSKTAFM 600 LSHGWVFLMG FSVVILSLSF KIGSFMYTGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-42 | 10 | 165 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g090723.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144591 | 0.0 | BT144591.1 Medicago truncatula clone JCVI-FLMt-18E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469279.1 | 0.0 | NAC domain-containing protein 53 isoform X1 | ||||
Swissprot | Q84K00 | 1e-87 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A072VNW9 | 0.0 | A0A072VNW9_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004496133.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5347 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 5e-90 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g090723.1 |
Entrez Gene | 25484826 |