PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g088860.1 | ||||||||
Common Name | MTR_1g088860, NF-YB6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YB | ||||||||
Protein Properties | Length: 195aa MW: 22243.4 Da PI: 5.7934 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.9 | 6.9e-54 | 35 | 130 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdr+lPianv+rimk++lP nakiskdaket+qecvsef+sfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy+eplk yl kyrel++ Medtr1g088860.1 35 KEQDRLLPIANVGRIMKQILPPNAKISKDAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGTLGFDDYAEPLKRYLYKYRELDA 128 89******************************************************************************************98 PP NF-YB 96 ek 97 e+ Medtr1g088860.1 129 ER 130 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.0E-54 | 28 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.44E-41 | 37 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-27 | 40 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.6E-19 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 3.6E-19 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 3.6E-19 | 106 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGDNNKGKQV SDREVFKYNT NFTSHEQEQD HEVIKEQDRL LPIANVGRIM KQILPPNAKI 60 SKDAKETMQE CVSEFVSFVT GEASDKCHKE KRKTVNGDDV CWALGTLGFD DYAEPLKRYL 120 YKYRELDAER GNQNNKGNNN INININNNNS DEIENNINET YYYDDGKSQT PRKVNVASSS 180 MFNNRNSGPQ SRGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-44 | 31 | 125 | 3 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.25734 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g088860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918279 | 0.0 | JQ918279.1 Medicago truncatula nuclear transcription factor Y subunit B6 (NF-YB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469195.1 | 1e-143 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O82248 | 2e-59 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | I3TAW4 | 1e-142 | I3TAW4_MEDTR; Nuclear transcription factor Y protein | ||||
STRING | GLYMA02G17310.1 | 1e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-59 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g088860.1 |
Entrez Gene | 25484764 |
Publications ? help Back to Top | |||
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