PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g088860.1

Common Name

MTR_1g088860, NF-YB6

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YB

Protein Properties

Length: 195aa MW: 22243.4 Da PI: 5.7934

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g088860.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.9	6.9e-54	35	130	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdr+lPianv+rimk++lP nakiskdaket+qecvsef+sfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy+eplk yl kyrel++ Medtr1g088860.1 35 KEQDRLLPIANVGRIMKQILPPNAKISKDAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGTLGFDDYAEPLKRYLYKYRELDA 128 89******************************************************************************************98 PP NF-YB 96 ek 97 e+ Medtr1g088860.1 129 ER 130 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.0E-54	28	156	IPR009072	Histone-fold
SuperFamily	SSF47113	6.44E-41	37	160	IPR009072	Histone-fold
Pfam	PF00808	3.2E-27	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-19	68	86	No hit	No description
PRINTS	PR00615	3.6E-19	87	105	No hit	No description
PRINTS	PR00615	3.6E-19	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGDNNKGKQV SDREVFKYNT NFTSHEQEQD HEVIKEQDRL LPIANVGRIM KQILPPNAKI 60 SKDAKETMQE CVSEFVSFVT GEASDKCHKE KRKTVNGDDV CWALGTLGFD DYAEPLKRYL 120 YKYRELDAER GNQNNKGNNN INININNNNS DEIENNINET YYYDDGKSQT PRKVNVASSS 180 MFNNRNSGPQ SRGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-44	31	125	3	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.25734	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g088860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918279	0.0	JQ918279.1 Medicago truncatula nuclear transcription factor Y subunit B6 (NF-YB6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469195.1	1e-143	nuclear transcription factor Y subunit B-4
Swissprot	O82248	2e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	I3TAW4	1e-142	I3TAW4_MEDTR; Nuclear transcription factor Y protein
STRING	GLYMA02G17310.1	1e-75	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-59	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Medtr1g088860.1
Entrez Gene	25484764

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]