PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g087190.1 | ||||||||
Common Name | MTR_0036s0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 55aa MW: 6453.56 Da PI: 6.4957 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.1 | 1.3e-17 | 6 | 52 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 +pGfrFhPtdee+v++yLk+k++gk +++++++ +diyk+ePwdLp Medtr1g087190.1 6 APGFRFHPTDEEIVCFYLKRKLTGKLPPCFDHLAFIDIYKFEPWDLP 52 69********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-17 | 4 | 54 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.668 | 5 | 54 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-9 | 7 | 47 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
MSLYQAPGFR FHPTDEEIVC FYLKRKLTGK LPPCFDHLAF IDIYKFEPWD LPSM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13512 | 2e-66 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g087190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152921 | 5e-87 | AC152921.8 Medicago truncatula clone mth2-102h2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443146.1 | 1e-33 | NAC domain-containing protein 53 | ||||
Swissprot | Q9FIW5 | 3e-16 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A072TIW7 | 3e-32 | A0A072TIW7_MEDTR; NAC transcription factor-like protein | ||||
TrEMBL | G7IDR6 | 1e-32 | G7IDR6_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES61667 | 3e-32 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-18 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g087190.1 |
Entrez Gene | 25479871 |
Publications ? help Back to Top | |||
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