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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g081570.1 | ||||||||
Common Name | MTR_1g081570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GeBP | ||||||||
Protein Properties | Length: 100aa MW: 11302.9 Da PI: 9.0741 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 39.4 | 1.7e-12 | 28 | 99 | 9 | 95 |
DUF573 9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +eDei++LqG++d++ ++g+s+++di fy+++ K rrLKk + +k + gk+++f+++h+q +fe+s+ki Medtr1g081570.1 28 NEDEITILQGFLDYNVNRGSSYHNDIGSFYDQI---------------KFRRLKKNHCMVLHKFDFGKDFAFKRAHYQATFEISHKI 99 69*****************************98...............68**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.1E-8 | 28 | 99 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MSTFATTAAI PTTIILALPN TAATANVNED EITILQGFLD YNVNRGSSYH NDIGSFYDQI 60 KFRRLKKNHC MVLHKFDFGK DFAFKRAHYQ ATFEISHKI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g081570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591032.2 | 6e-30 | probable transcription factor At3g04930 | ||||
Swissprot | F4K5T4 | 3e-14 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | G7I7E6 | 1e-67 | G7I7E6_MEDTR; DUF573 family protein | ||||
STRING | AES61282 | 2e-68 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-16 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g081570.1 |
Entrez Gene | 11407975 |
Publications ? help Back to Top | |||
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