PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g080890.1
Common NameMTR_1g080890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 356aa    MW: 38733.4 Da    PI: 6.9114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g080890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10204248554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + v+Y+k L
  Medtr1g080890.1 204 HSIAERLRRERIAERMKALQELVPSiN------KTDKAAMLDEIVDYVKFL 248
                      99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.23E-12197253No hitNo description
SuperFamilySSF474596.54E-16197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.729199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8204248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAGNCSEGLG DDFFEQILAV PENGVGYGGV LQLGSTPHGG SLRGGGGGIM PLGLNLEQNH  60
HGFLRQHQDG TRFVDNVVDV EGNITNNNNN NHHHLRLHDI NNHNNNNNIT SSSPSSTPGI  120
TDRDSMQMRG LFSTFGQLHT PTHAQPVRPM LQSPPPQPQL HLHHQHQQHF QSQQPNPASV  180
TAMPQPPGIR PRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPSIN KTDKAAMLDE  240
IVDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADVPVSAVEG EDIEGGTNQQ AWAKWSNDGT  300
EQQVAKLMEE DVGAAMQLLQ SKALCIMPIS LASAIFRMPQ SDSSTIIKPE SNNHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.265100.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g080890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468981.10.0transcription factor UNE12
SwissprotO227683e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A072VNM40.0A0A072VNM4_MEDTR; Putative transcription factor bHLH family
STRINGXP_004496017.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]