PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g071360.2
Common NameMTR_1g071360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 344aa    MW: 40253.6 Da    PI: 5.3525
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g071360.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35331232101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++++++d+++++++sw+++g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +g+++ll+
  Medtr1g071360.2  33 FLTKTFDVVDDQSTNHIVSWNRSGTSFVVWDTHAFSNLLLPRYFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFLRGQRHLLR 117
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+rkk
  Medtr1g071360.2 118 NIRRKK 123
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-5829122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3730122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.13E-3330122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNYMYSVKEE HLEPTIPPPQ PNEGLNEIRP QPFLTKTFDV VDDQSTNHIV SWNRSGTSFV  60
VWDTHAFSNL LLPRYFKHNN FSSFVRQLNT YGFRKIDSDR WEFANEGFLR GQRHLLRNIR  120
RKKGPSQPIE VGCVGLDAEI DRLRQEKHML MTELVSLRKQ QYNTTLYLLE MEHRLEGIKI  180
NQKKMMSFLA RAMKNPVFIH QLLQQKEKKK ELEEAVTVTK KRRLVEQGTR LGIGQSSSVK  240
VEPLELCDYE FGVSELEMLA LEMQVFGRGE MNKEEVHEPE ALESQEKMET VLDDEGFWED  300
LMFSMKFEGR FDIPTSEDNN ENEDDSSEPL SQEFRVNSFH SVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-233312229129Heat shock factor protein 1
5d5v_B1e-233312229129Heat shock factor protein 1
5d5v_D1e-233312229129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207222KKKELEEAVTVTKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g071360.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1560120.0AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468592.10.0heat stress transcription factor A-7a
RefseqXP_024635873.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-96HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A072VKS20.0A0A072VKS2_MEDTR; Heat shock transcription factor A3
STRINGAES608290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-89heat shock transcription factor A6B
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]