PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g071360.2 | ||||||||
Common Name | MTR_1g071360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 344aa MW: 40253.6 Da PI: 5.3525 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.9 | 4.4e-35 | 33 | 123 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k++++++d+++++++sw+++g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +g+++ll+ Medtr1g071360.2 33 FLTKTFDVVDDQSTNHIVSWNRSGTSFVVWDTHAFSNLLLPRYFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFLRGQRHLLR 117 9****************************************************************999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+rkk Medtr1g071360.2 118 NIRRKK 123 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.8E-58 | 29 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.13E-33 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.6E-31 | 33 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 33 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 72 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MNYMYSVKEE HLEPTIPPPQ PNEGLNEIRP QPFLTKTFDV VDDQSTNHIV SWNRSGTSFV 60 VWDTHAFSNL LLPRYFKHNN FSSFVRQLNT YGFRKIDSDR WEFANEGFLR GQRHLLRNIR 120 RKKGPSQPIE VGCVGLDAEI DRLRQEKHML MTELVSLRKQ QYNTTLYLLE MEHRLEGIKI 180 NQKKMMSFLA RAMKNPVFIH QLLQQKEKKK ELEEAVTVTK KRRLVEQGTR LGIGQSSSVK 240 VEPLELCDYE FGVSELEMLA LEMQVFGRGE MNKEEVHEPE ALESQEKMET VLDDEGFWED 300 LMFSMKFEGR FDIPTSEDNN ENEDDSSEPL SQEFRVNSFH SVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 33 | 122 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 33 | 122 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 33 | 122 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 222 | KKKELEEAVTVTKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g071360.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC156012 | 0.0 | AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468592.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_024635873.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-96 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A072VKS2 | 0.0 | A0A072VKS2_MEDTR; Heat shock transcription factor A3 | ||||
STRING | AES60829 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-89 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g071360.2 |
Entrez Gene | 11434146 |
Publications ? help Back to Top | |||
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