PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g070250.1 | ||||||||
Common Name | MTR_1g070250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21726.6 Da PI: 5.4728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Medtr1g070250.1 40 YECVFCKRGFTTAQALGGHMNIH 62 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.38E-6 | 38 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 38 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEFSYLQDDS KSSSDENIDR SSDQNNDDDH DHHMGIGRSY ECVFCKRGFT TAQALGGHMN 60 IHRKDRANNN KSATKTNFAP PSSSKLVVDH DNYGDLGFYS TINPSHLARG GYYSSISSTT 120 TTPEVDSLNY HQIYFPSHVQ YSEMLCVENQ RMFGQDWRGL SLYTNPLNKD KIENNNEVGE 180 LDLELRLGHY P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23195 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g070250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141418 | 0.0 | BT141418.1 Medicago truncatula clone JCVI-FLMt-1D20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468537.1 | 1e-143 | zinc finger protein GIS | ||||
TrEMBL | I3SLS0 | 1e-141 | I3SLS0_MEDTR; Transcriptional regulator superman protein | ||||
STRING | XP_004495117.1 | 1e-94 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 7e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g070250.1 |
Entrez Gene | 25484307 |
Publications ? help Back to Top | |||
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