PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g069155.1
Common NameMTR_1g069155
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 535aa    MW: 59432.6 Da    PI: 6.3476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g069155.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-16327373455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Medtr1g069155.1 327 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 373
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.012323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-16326377No hitNo description
PfamPF000102.0E-13327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-18329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MNYHVPDFDI QMDDEDEYPI HHSKKPFTQQ DDEIMELLWQ NGQVVMQSQN HRQFRKPLAP  60
ATTTTASRVI PEHREIRSTD ADNYMNQHLF MQEDEMASWL FDSMNEVEDP PFNRHDFSSE  120
TIFHSSAGSA GQKHGGGVIQ AQATVRESEF VRQSRPAVVA ASRPPIHPAR KPEMVVNRTH  180
NFTHFTNTNQ SNTRSEPGAS SSSMIAAGRE STVVDSCDTP IMTAKTYAAS RLSETVRSAT  240
AETGCVSVST TGKAATTTLD MTVTSSPGCS SGSAEPVHRE PELDRKRKGR EPEESEFQSE  300
DVDFECREEK KQHRGSTSAK RSRAAEVHNL SERKRRDRIN EKMKALQELI PRCNKSDKAS  360
MLDEAIEYLK SLQLQVQMMS MGCGMVPMMF PGIQQFMPAM GMGMGMGLGM EMGMGMNRPV  420
MPFPNMLPNS PLQTAATVAG PFGPRFAMPP FHVPHVPAAA PDSSRMQAEN QSDNHLNSLG  480
ALPPDQSRIP NPNFADPYQQ YLGPHQVQQL MQAMNQQNVN RPGTSGSQEN PEKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g069155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468377.10.0transcription factor PIF1
TrEMBLA0A072VK930.0A0A072VK93_MEDTR; Putative transcription factor bHLH family
STRINGXP_004495025.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-59phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]