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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g067650.1 | ||||||||
Common Name | MTR_1g067650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 19545.5 Da PI: 10.351 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Medtr1g067650.1 39 FECKTCNRKFSSFQALGGHRASH 61 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.2 | 6e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F+ L H+r+H Medtr1g067650.1 85 HQCSICGQEFKLGQALGGHMRRH 107 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.8E-11 | 39 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.14E-7 | 39 | 107 | No hit | No description |
SMART | SM00355 | 0.19 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.9E-9 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MMKRQRENEE KESIDLATTL MLLSSRITQQ NKTYSPVEFE CKTCNRKFSS FQALGGHRAS 60 HKKLKLLDSE EAHKVNIHNN KPKMHQCSIC GQEFKLGQAL GGHMRRHRIN NEGFSSSSIN 120 YQVIAKSSPV LKRSNSKRVM IMELDLNLTP LENDLKLLFG NKAPKVDNSL F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3189 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g067650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468306.1 | 1e-124 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 2e-42 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A072VLR4 | 1e-123 | A0A072VLR4_MEDTR; C2H2 type zinc finger transcription factor family protein | ||||
STRING | XP_004494993.1 | 1e-84 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-45 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g067650.1 |
Entrez Gene | 25484097 |
Publications ? help Back to Top | |||
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