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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Medtr1g064430.2 |
Common Name | MTR_1g064430 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family |
ARF |
Protein Properties |
Length: 703aa MW: 78527.9 Da PI: 7.2624 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr1g064430.2 | genome | Mt | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.8 | 2e-23 | 142 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f k+lt+sd+++ g +++p+ +ae++ +++ + + +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +
Medtr1g064430.2 142 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADPPLQ-NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLLAGDSIVFL--RAE 232
89*****************************95455553.7999*********************************************..448 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++ l+v+++r+
Medtr1g064430.2 233 NGDLCVGIRRA 243
8999****997 PP
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2 | Auxin_resp | 108 | 1e-35 | 308 | 391 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++Fev+Y+Prast+eF+vk+ ve+a++++++ G Rfkmafetedss++++ +G+v+gv+ +dp+ WpnS+Wr+L+
Medtr1g064430.2 308 AVTLAANRQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWfMGIVSGVQFVDPLLWPNSPWRLLQ 391
67899*****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 703 aa
Download sequence Send
to blast |
MTFQKFCSES FLKMNIFMDS RDNNNNNNSS EEVERCLDPQ LWHACAGGMV QMPTVNSKVY 60 YFPQGHAEHA CGPVNFMNCP KVPPLIPCKV LSIKYMADPE TDEVYAKLKL VPLSGNGNGN 120 GNDAADYDTV GGNENQDKPV SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYAADPPLQ 180 NILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL LAGDSIVFLR AENGDLCVGI 240 RRAKKGIGGG HEDPLPLGWN PVGENFPLPW FTQNENQMGR NINNNNGLNS GANMTGREKV 300 RPEAVLQAVT LAANRQPFEV IYYPRASTPE FCVKAPLVEA AMQIRWCSGI RFKMAFETED 360 SSRISWFMGI VSGVQFVDPL LWPNSPWRLL QVKWDEPDLL QNVRRVSPWL VELVANIPSI 420 NLSPFSQPRK KLRLSPHHDF PLDGQISVPS FPSNLLGQSN LFRCLPESTP AGMQGARHAH 480 YGLPISDLHL SKVQAGLFPA GFVPFDHAAK LPSVSNNLMM QKSSMSENVS CLLSMASSTQ 540 SSKKFDDEKK PQLVLFGQKI LTEQQISNDR SSDGNTNKMG NFSDGSGTPH HQQVLQKRSS 600 CESFQWHRDN HEETEASLES TDHCKVFLES EDVGRTIDLS LLGSYDELYR KLADMFGIEK 660 YEKVSRVLYR DISGAVKHIG EEPFSNFTRT ARRLTILMDS SK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Young ND, et al.
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] - Huang J,Li Z,Zhao D
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]
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