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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g059270.2 | ||||||||
Common Name | MTR_1g059270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27755.5 Da PI: 6.0546 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 170 | 217 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L k +++++sLq Medtr1g059270.2 170 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 217 8*************************9....899999*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.65E-9 | 164 | 221 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-15 | 164 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.462 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 167 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-7 | 170 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-8 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEQTTFESIQ FNEEIQGIMA PATETANSFT ALLELPPTQV VELLHSSEIT GKPPKPYPLT 60 CNTGNLTFPS NAALVERAAR FSVFAGENST NSPNLPQVKD ELPETEEGGC VSDPTVENTN 120 FKSAKRKERE KKVKLSSKKS KSIAADENSG NGEELPYVHV RVRRGQATDS HSLAERARRE 180 KINARMKLLQ ELVPGCNKIS GTALVLDKII NHVQSLQHEV EILSMKLAAV NPIIDFNLDS 240 ILAAEYLCTQ IR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.207 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g059270.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590372.1 | 1e-179 | transcription factor bHLH48 | ||||
Swissprot | Q8VZ02 | 4e-70 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A072VIE0 | 0.0 | A0A072VIE0_MEDTR; Transcription factor | ||||
STRING | AES60623 | 1e-178 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g059270.2 |
Entrez Gene | 11431256 |
Publications ? help Back to Top | |||
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