PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g059270.1

Common Name

MTR_1g059270

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 327aa MW: 36107.5 Da PI: 5.2613

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g059270.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.8e-09	170	217	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L k +++++sLq Medtr1g059270.1 170 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 217 8***********************9....899999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.25E-9	164	221	No hit	No description
SuperFamily	SSF47459	9.95E-15	164	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.462	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-14	167	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	170	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-8	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEQTTFESIQ FNEEIQGIMA PATETANSFT ALLELPPTQV VELLHSSEIT GKPPKPYPLT 60 CNTGNLTFPS NAALVERAAR FSVFAGENST NSPNLPQVKD ELPETEEGGC VSDPTVENTN 120 FKSAKRKERE KKVKLSSKKS KSIAADENSG NGEELPYVHV RVRRGQATDS HSLAERARRE 180 KINARMKLLQ ELVPGCNKIS GTALVLDKII NHVQSLQHEV EILSMKLAAV NPIIDFNLDS 240 ILAAEGMSLM DSNFPNTVSP AVWPEIPHNG NRQQFQQSWQ SDAFHQPLWG REENNPNFIT 300 PENSLLSYDS SANSVSLHSN QMKMEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.207	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g059270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003590372.1	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	5e-83	BH048_ARATH; Transcription factor bHLH48
TrEMBL	G7I997	0.0	G7I997_MEDTR; Putative transcription factor bHLH family
STRING	AES60623	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	9e-88	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr1g059270.1
Entrez Gene	11431256

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]