PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g057980.1
Common NameMTR_1g057980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 298aa    MW: 34560.6 Da    PI: 7.2089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g057980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-1480126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed +lv++    G + W+ +a+ m+ gR++kqc++rw+++l
  Medtr1g057980.1  80 KGQWTHDEDGILVKLLDYSGFNYWSQVAKFMN-GRSGKQCRERWHNHL 126
                      799*****************************.*************97 PP
2Myb_DNA-binding53.55.6e-17132175146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +W++eEd++l++a+k  G++ ++ Ia++++ gRt++++k+rw++
  Medtr1g057980.1 132 KESWSEEEDKILIEAHKIVGNK-FAEIAKRLP-GRTENSIKNRWNS 175
                      578*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.75575130IPR017930Myb domain
SuperFamilySSF466895.19E-2977173IPR009057Homeodomain-like
SMARTSM007177.8E-1179128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2381132IPR009057Homeodomain-like
PfamPF139215.0E-1783141No hitNo description
CDDcd001678.89E-1083126No hitNo description
PROSITE profilePS5129418.112131181IPR017930Myb domain
SMARTSM007171.1E-16131179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21133178IPR009057Homeodomain-like
CDDcd001672.02E-12134174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAMHDLLNT DRGILDLSKQ NFFQYGETSQ YRIISSIPPS LVYGNQLEDH DQDNILSDQK  60
RQKKDHKDNE IQQKEPNIRK GQWTHDEDGI LVKLLDYSGF NYWSQVAKFM NGRSGKQCRE  120
RWHNHLRPDI KKESWSEEED KILIEAHKIV GNKFAEIAKR LPGRTENSIK NRWNSAKRSL  180
NTTKMSNRRN SWKRTLLHKY ITEITNSKDV QKVPKNSTNM MNIEYQTNFD NTNTNHGLSH  240
VRHEISECGV NFEGLVTSME ELGGNVTMML NGDDGSGTMS HEIGSYQMEF FPHVNDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-40761823110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g057980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467911.20.0transcription factor MYB118
TrEMBLA0A072VKK90.0A0A072VKK9_MEDTR; Myb-related transcription factor, putative
STRINGAES786305e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-48myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]