PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g057980.1 | ||||||||
Common Name | MTR_1g057980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 34560.6 Da PI: 7.2089 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.1e-14 | 80 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +lv++ G + W+ +a+ m+ gR++kqc++rw+++l Medtr1g057980.1 80 KGQWTHDEDGILVKLLDYSGFNYWSQVAKFMN-GRSGKQCRERWHNHL 126 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.6e-17 | 132 | 175 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +W++eEd++l++a+k G++ ++ Ia++++ gRt++++k+rw++ Medtr1g057980.1 132 KESWSEEEDKILIEAHKIVGNK-FAEIAKRLP-GRTENSIKNRWNS 175 578*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.755 | 75 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.19E-29 | 77 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 79 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 81 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.0E-17 | 83 | 141 | No hit | No description |
CDD | cd00167 | 8.89E-10 | 83 | 126 | No hit | No description |
PROSITE profile | PS51294 | 18.112 | 131 | 181 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 131 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 133 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-12 | 134 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEAMHDLLNT DRGILDLSKQ NFFQYGETSQ YRIISSIPPS LVYGNQLEDH DQDNILSDQK 60 RQKKDHKDNE IQQKEPNIRK GQWTHDEDGI LVKLLDYSGF NYWSQVAKFM NGRSGKQCRE 120 RWHNHLRPDI KKESWSEEED KILIEAHKIV GNKFAEIAKR LPGRTENSIK NRWNSAKRSL 180 NTTKMSNRRN SWKRTLLHKY ITEITNSKDV QKVPKNSTNM MNIEYQTNFD NTNTNHGLSH 240 VRHEISECGV NFEGLVTSME ELGGNVTMML NGDDGSGTMS HEIGSYQMEF FPHVNDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-40 | 76 | 182 | 3 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g057980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467911.2 | 0.0 | transcription factor MYB118 | ||||
TrEMBL | A0A072VKK9 | 0.0 | A0A072VKK9_MEDTR; Myb-related transcription factor, putative | ||||
STRING | AES78630 | 5e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-48 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g057980.1 |
Entrez Gene | 25483753 |
Publications ? help Back to Top | |||
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