PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g056530.3 | ||||||||
Common Name | MTR_1g056530, NF-YA1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YA | ||||||||
Protein Properties | Length: 333aa MW: 36391.8 Da PI: 8.5761 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.1 | 3.9e-30 | 164 | 219 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RR++Rak+ ++kl +k +kpy+heSRh hA+rRpRg+gGrF Medtr1g056530.3 164 GPTYVNAKQYHGIIRRRHSRAKAVLQNKL-IKRNKPYMHESRHLHAMRRPRGCGGRF 219 79***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-33 | 161 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.465 | 162 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 165 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.6E-25 | 165 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 196 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAMQPVYLKE HEGNVHNSVG QFSSVTSAPW WSNAYGSQPV YGGDSCGQMK PFSLELSNYI 60 DQLAPSKNLV RGVEQLFDKG HTNQFTIFPD DCKMSVDTPN HQATLSLQSP FAAEPLNRFE 120 LGFNQSMICA KYPYMDQFYG LFSTYGPQIS GRIMLPLSMT SDDGPTYVNA KQYHGIIRRR 180 HSRAKAVLQN KLIKRNKPYM HESRHLHAMR RPRGCGGRFL NTKVSANGNG KSGSEENGNI 240 GGLQLQSSGS QSSEVLQSEV GTLNSSKETN GGSPNVSGSE VTSMYTQGVL DSFTVNHIGS 300 TVHSLGDMID TGHGIVMPTK WFAAAGRQLL EP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-16 | 163 | 220 | 2 | 60 | HAPB protein |
4g92_A | 2e-16 | 163 | 220 | 2 | 60 | HAPB protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1646 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g056530.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918266 | 0.0 | JQ918266.1 Medicago truncatula CCAAT-binding transcription factor, subunit YA (NF-YA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590326.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | G7I8J1 | 0.0 | G7I8J1_MEDTR; CCAAT-binding transcription factor | ||||
STRING | AES60577 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 5e-54 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g056530.3 |
Entrez Gene | 11435082 |
Publications ? help Back to Top | |||
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