PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g056530.2
Common NameMTR_1g056530, NF-YA1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 333aa    MW: 36391.8 Da    PI: 8.5761
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g056530.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.13.9e-30164219258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p YVNaKQy++I++RR++Rak+  ++kl +k +kpy+heSRh hA+rRpRg+gGrF
  Medtr1g056530.2 164 GPTYVNAKQYHGIIRRRHSRAKAVLQNKL-IKRNKPYMHESRHLHAMRRPRGCGGRF 219
                      79***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-33161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.465162222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-21165187IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-25165219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-21196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAMQPVYLKE HEGNVHNSVG QFSSVTSAPW WSNAYGSQPV YGGDSCGQMK PFSLELSNYI  60
DQLAPSKNLV RGVEQLFDKG HTNQFTIFPD DCKMSVDTPN HQATLSLQSP FAAEPLNRFE  120
LGFNQSMICA KYPYMDQFYG LFSTYGPQIS GRIMLPLSMT SDDGPTYVNA KQYHGIIRRR  180
HSRAKAVLQN KLIKRNKPYM HESRHLHAMR RPRGCGGRFL NTKVSANGNG KSGSEENGNI  240
GGLQLQSSGS QSSEVLQSEV GTLNSSKETN GGSPNVSGSE VTSMYTQGVL DSFTVNHIGS  300
TVHSLGDMID TGHGIVMPTK WFAAAGRQLL EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16163220260HAPB protein
4g92_A2e-16163220260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.16460.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g056530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182660.0JQ918266.1 Medicago truncatula CCAAT-binding transcription factor, subunit YA (NF-YA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590326.10.0nuclear transcription factor Y subunit A-10
TrEMBLG7I8J10.0G7I8J1_MEDTR; CCAAT-binding transcription factor
STRINGAES605770.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-54nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]