PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g054285.1
Common NameMTR_1g054285
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33372.3 Da    PI: 7.3435
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g054285.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18153207256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Lee F+++ +++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Medtr1g054285.1 153 RKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTK 207
                      778899***********************************************98 PP
2HD-ZIP_I/II127.17.4e-41153243192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Medtr1g054285.1 153 RKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 243
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-18146210IPR009057Homeodomain-like
PROSITE profilePS5007117.329149209IPR001356Homeobox domain
SMARTSM003895.1E-17151213IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-17153207IPR009057Homeodomain-like
PfamPF000467.6E-16153207IPR001356Homeobox domain
CDDcd000864.53E-16153210No hitNo description
PROSITE patternPS000270184207IPR017970Homeobox, conserved site
PfamPF021835.7E-11209243IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.5E-26209252IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MELALSLGDT PKLPLSFLDK PNKDPLPSFF STQQGKTSEE EKRGSSDPPI QLDLLPFTPV  60
LRSPHPSSHL PIPWLTQPCG PVRELDVNRF PAATTEDVDD GTSLSSPSSS VSPFAMDFSM  120
RNNNNAEYGG RNKRENEGEA ERGSDDDENG STRKKLRLSK DQSAFLEESF KEHTTLNPKQ  180
KLALAKQLNL SPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELQELR  240
ALKTTQPFYM QLPATTLTMC PSCERVATNP CNNQTNTNKS RFSNAQAQAQ AHQISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157TRKKLRL
2201209RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g054285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467691.10.0homeobox-leucine zipper protein HOX11
SwissprotP466652e-85HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A072VJV20.0A0A072VJV2_MEDTR; Homeobox associated leucine zipper protein
STRINGXP_004497887.11e-162(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-69homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]