PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053960.2
Common NameMTR_1g053960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 228aa    MW: 23746.1 Da    PI: 9.7798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053960.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-073155327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++C+ f     Ck+Gd+C+FaHg+
  Medtr1g053960.2 31 SRICNKFNSLEGCKFGDKCHFAHGE 55
                     678888888889***********96 PP
2zf-CCCH36.96.3e-12195218226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +fa+ G C +G+rC+FaHg
  Medtr1g053960.2 195 KTKLCENFAK-GSCTFGERCHFAHG 218
                      8*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-122759IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-72859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1882856IPR000571Zinc finger, CCCH-type
SMARTSM003560.00683055IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-53055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.68E-1494168IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-1597166IPR004088K Homology domain, type 1
SMARTSM003225.1E-1197167IPR004087K Homology domain
PROSITE profilePS5008413.75498162IPR004088K Homology domain, type 1
PfamPF000132.1E-10100163IPR004088K Homology domain, type 1
CDDcd001053.99E-14100163No hitNo description
Gene3DG3DSA:4.10.1000.102.8E-15192224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8193223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723193220IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9195218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMNLKPAAPP RNVAAPPPVS NNGSAQHAVK SRICNKFNSL EGCKFGDKCH FAHGEWELGK  60
PFAPSVDDHR LMAPTNVGRM PGRVEAPSGL GGTSFGANST AKISVEASLA GAIIGKGGVH  120
SKQICRQTGV KFSIRDHETD PNLRNIELEG TFDQIAQASN MVKDLLLTLS VSAPPKSTPG  180
APAGGGPAAP GRNIKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKLGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.170990.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053960.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467665.11e-166zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ31e-74C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A072VIQ31e-164A0A072VIQ3_MEDTR; Putative transcription factor C3H family
TrEMBLA0A072VJA91e-165A0A072VJA9_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGXP_004497899.11e-131(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-62C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]