PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g052470.1
Common NameMTR_1g052470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 383aa    MW: 41799.3 Da    PI: 8.704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g052470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12310355655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Medtr1g052470.1 310 SIAERLRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKNLQ 355
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15307372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-12308357No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14309368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSNSNTHHQ LKQQNQSYSS GLLRFRSAPS SLFSNLTPSA DSNKLTKHFW DGSESERFVS  60
NDNNNISGLS CSKEMNSGYG AGGSGLPPHY PRHGSTSTSS SAMDGSFGLV GSLGMDQETL  120
HDKSFGSNLL RQGSSPAGLF SNISFQNGFS TMKGVGNYAT VIGSNGELSP SINRLNTQLS  180
FPSRNASSLG ILSHISEIDN EDIEATSPDD GGSNADSTHY GSGFPYSSWN DTQSFTENLS  240
GLKRGRSSNE KMFSDIQRGG LGNQVHTLSH QLSLPNTSSE MIAMEKLFQF PDSVPCKIRA  300
KRGCATHPRS IAERLRRTKI SERMRKLQEL VPNMDKQTNT SDMLDLAVDY IKNLQKQFKS  360
LSDKRANCKC MRMQMADKNQ IT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.71780.0glandular trichome| leaf| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g052470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467539.10.0transcription factor bHLH130
SwissprotQ66GR31e-93BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A072VIY50.0A0A072VIY5_MEDTR; Putative transcription factor bHLH family
STRINGXP_004497939.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]