PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g048750.1
Common NameMTR_1g048750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 272aa    MW: 31528.3 Da    PI: 8.6217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g048750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-1258109255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +  hn+ Er RR++iN+ ++ Lr+llP  +   + kKls  ++  ++ +YI + q
  Medtr1g048750.1  58 KLVHNASERDRRKKINNLYSSLRSLLPIsD---QMKKLSIPATISRVLKYIPEIQ 109
                      678*************************66...9999**************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.43356108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-1057113No hitNo description
SuperFamilySSF474592.75E-1357128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-958109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1058121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-762114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLAISPPMFS TIGWPFEESL SHNQHQNQLF NFHDQVEAEI NSTDPSQSTS SDLSMVKKLV  60
HNASERDRRK KINNLYSSLR SLLPISDQMK KLSIPATISR VLKYIPEIQK HVEGLVKRKE  120
EILLRLSPQV NEVNITKESQ KKKHSYNSGF VVSTSWLNDS EVAIQISCYT VHKIPLSEIL  180
LCLENDGILL LNVSSSQTFG ERIFYNLHFQ KALVNLVVLC HMHWRACAKV HIIDGPVTIR  240
WRWYMRSHEQ VNDHVGWWPW MLELQETIFR N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g048750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1459201e-172BT145920.1 Medicago truncatula clone JCVI-FLMt-13O14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631445.11e-151transcription factor ORG2
TrEMBLA0A072VT900.0A0A072VT90_MEDTR; Transcription factor ORG2-like protein
STRINGXP_004513200.11e-112(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-51bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]