PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g048720.3 | ||||||||
Common Name | MTR_1g048720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 25108.7 Da PI: 7.5967 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 66 | 116 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR++iN+ ++ Lr+llP ++ Kls ++ ++ +YI +Lq Medtr1g048720.3 66 KLVHNASERDRRKKINNLYSSLRSLLPVF---DQMKLSIPATISRVLKYIPELQ 116 678*************************8...8******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-15 | 56 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.268 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-12 | 65 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.06E-11 | 65 | 120 | No hit | No description |
Pfam | PF00010 | 6.7E-10 | 66 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-8 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MLAISPPMFS TIGWPFEEPL SHNQHQNSFY KDTVDQLFNF HDQVEAEINS TDPSQSTSSD 60 LSMVKKLVHN ASERDRRKKI NNLYSSLRSL LPVFDQMKLS IPATISRVLK YIPELQNQVE 120 GLIKRKDEIL LRLSPQVEEF ILSKESQRKK HSYNSGFVVS ISRLNDSEIT IQISCYTVQK 180 IPLSEILICL ENDGLLLLNV SSSKTFGGRV FYNLHFQVC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.23521 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g048720.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145920 | 0.0 | BT145920.1 Medicago truncatula clone JCVI-FLMt-13O14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467288.1 | 1e-159 | transcription factor ORG2 isoform X4 | ||||
TrEMBL | A0A072VIA2 | 1e-159 | A0A072VIA2_MEDTR; Transcription factor ORG2-like protein | ||||
STRING | XP_004513200.1 | 1e-116 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g048720.3 |
Entrez Gene | 25483184 |
Publications ? help Back to Top | |||
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