PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g048330.1 | ||||||||
Common Name | MTR_1g048330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 125aa MW: 13965.1 Da PI: 8.4852 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 24 | 47 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCCC CS HLH 7 erErrRRdriNsafeeLrellPka 30 + Er RR++ + ++eL +++ ++ Medtr1g048330.1 24 ISERGRRNNKEDMISELSDCIIHS 47 68*******************984 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MGNLCGGGCK PKLNPKIVIM VPPISERGRR NNKEDMISEL SDCIIHSYFN LSGYQNCCSN 60 LRFTKEMERY WKQIPSLTFT STEFSTSDKL SIFISSLFSI IIGFGIRTGE GNGLINSIIN 120 HTYQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g048330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229729 | 1e-80 | AC229729.10 Medicago truncatula clone mth2-168p5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072VI79 | 1e-85 | A0A072VI79_MEDTR; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g048330.1 |
Entrez Gene | 25483169 |
Publications ? help Back to Top | |||
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