PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g046810.1
Common NameMTR_1g046810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 317aa    MW: 35893.1 Da    PI: 9.1467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g046810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00074163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k+F+++ +L  H   H
  Medtr1g046810.1 41 YNCEFCHKTFTSSKSLGGHKTIH 63
                     89**************9888776 PP
2zf-C2H215.35.6e-05120138523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       C+k+Fs++  Lk H+r H
  Medtr1g046810.1 120 VCHKVFSSNTALKGHMRWH 138
                      6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-63768No hitNo description
Gene3DG3DSA:3.30.160.602.7E-43964IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4684168IPR007087Zinc finger, C2H2
SMARTSM003550.0524163IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-64165IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576678.66E-5103140No hitNo description
Gene3DG3DSA:3.30.160.604.8E-5114139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035577116138IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-4119138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNKPYSSPSS HHSFHKPKNS HDHDHQQSLE NDKKNPGSRI YNCEFCHKTF TSSKSLGGHK  60
TIHRSSKILV QPETNKQIRD HDVNNGGTLK KTTKITCVFS SSLHNHDHDD WKPKNHTSDV  120
CHKVFSSNTA LKGHMRWHTP KGLKKDTIIP SLTAPSSLEQ SHLEFLPATD LSKYLPPISY  180
KTKKRSPRRR RIADNDEEIT IAAKTLLYLS KGGYEGSTKR QKISSNTVDD NEKMKEQGVL  240
LTRCVCHNEK NLVLKLRIPK DTIFQTSQDS KEPAGSNLDI EGMKNVSEDE TELGSRVVRN  300
FDLNELPSDD FEDETN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g046810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VHD00.0A0A072VHD0_MEDTR; C2H2 and C2HC zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-10C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]