PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g046680.1 | ||||||||
Common Name | MTR_1g046680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 26930.2 Da PI: 7.0873 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.7 | 4.2e-20 | 174 | 208 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ +Tp+WR gp+g+ktLCnaCG++y++ +l Medtr1g046680.1 174 CHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRL 208 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-17 | 168 | 218 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.295 | 168 | 204 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-16 | 170 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-15 | 172 | 206 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.56E-15 | 173 | 221 | No hit | No description |
Pfam | PF00320 | 4.4E-18 | 174 | 208 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 174 | 199 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MEALGSVDDL LDFSSDIGED DDDDKPKKAF PSLKPECSDP PSLNPLALDD PINSLSEEVA 60 EEELEWLSNK DAFPAVETFV DLSCIQPDLL KHQMTSPMLE NSTSSSNSNN SSNSITLLSG 120 YNHMKFPVRA RSKSRSKPRL GLADASNLQF PWKQPSTKTS KEKVKQTPTI GRKCHHCGVD 180 DTPQWRAGPN GPKTLCNACG VRYKSGRLVP EYRPANSPTF RSDVHSNSHR KVVEMRKQKG 240 MGTG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.11799 | 0.0 | flower| leaf| root |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g046680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467175.1 | 0.0 | GATA transcription factor 1 | ||||
TrEMBL | A0A072VHW7 | 0.0 | A0A072VHW7_MEDTR; GATA type zinc finger transcription factor family protein | ||||
STRING | GLYMA10G25480.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-41 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g046680.1 |
Entrez Gene | 25483072 |
Publications ? help Back to Top | |||
---|---|---|---|
|